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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttatttaaattattaattgtttaataattaatagtatctgattaattttatttgcttcatattggatcctttgctgtttctggaattctctgttttatttttttggggggcagGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTG

Basic information

species Glycine max
transcript GLYMA20G02950.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02950.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g00140.t01 (Vitis vinifera), 3'ss of exon 2
gtttttatttaaattattaattgtttaataattaatagtatctgattaattttatttgcttcatattggatcctttgctgtttctggaattctctgttttatttttttggggggcagGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTG
  |||  ||| | ||  || |      |  |||   |||   |  || || ||  |      | || | || || | |   |  ||| |   |           || ||||  | ||| || |||||||| || |||||||||||||||||||||||||||||||||  |||| | |  || ||||| |||||||||||||| || || || |
--tttcttttgagttcatagtaac---aggatttgcagttgtt--ttgatctt--tgatcctacatagaattctcttcatatgttggcaaattac--------cttgtgggttgtagGAACTTCGGCATGCCCGGGTGGAAAATTCTATTGTCGGAATGCAGGACATGTTCCTCTGTTGTTATTTTCCTCTAGAGTGAACGATGGTATCTGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602878|gb|DB972452.1|DB972452
EST:     TCAGTTCAATGATGATTTCTGCGATTGTGCTGATGGCACCGATGAACCTG                         GTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATT
genomic: TCAGTTCAATGATGATTTCTGCGATTGTGCTGATGGCACCGATGAACCTGgtttttattt ... tggggggcagGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattggatcctttgctgtttctggaattctctgttttatttttttggggggcagGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTG
                           ttctctgttttatttt  CT-rich tract
                         aattctctgttttatt  TA-rich tract