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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctctaatcacatgataacaaatgtcgtctttaccttgatatggtattaattgttaccggaactttacagGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG

Basic information

species Glycine max
transcript GLYMA20G02950.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004191|gb|DB989308.1|DB989308
EST:     ATGTAGCTGTATAATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAG                         GAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
genomic: ATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAGgtacttctct ... aactttacagGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
EST: gi|21601739|gb|BQ612070.1|BQ612070
EST:     ATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAG                         GAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
genomic: ATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAGgtacttctct ... aactttacagGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
EST: gi|31472042|gb|CD414070.1|CD414070
EST:     CAAGAGGAAAGGCTGAAG                         GAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
genomic: CAAGAGGAAAGGCTGAAGgtacttctct ... aactttacagGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
EST: gi|213602617|gb|DB978088.1|DB978088
EST:     ATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAG                         GAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
genomic: ATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAGgtacttctct ... aactttacagGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
EST: gi|51344791|gb|CO985524.1|CO985524
EST:     ATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAG                         GAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT
genomic: ATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAGgtacttctct ... aactttacagGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacaaatgtcgtctttaccttgatatggtattaattgttaccggaactttacagGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG
                             tattaat  putative branch site (score: 2)
 atatggtattaatt  TA-rich tract