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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttactaggctgtgattctttttcttgagacttgagtcccgagttgatcaaattttattttgaacaggtag

Basic information

species Glycine max
transcript GLYMA20G02950.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004191|gb|DB989308.1|DB989308
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG                         TATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTATGCT
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttac ... gaacaggtagTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTATGCT
EST: gi|21601739|gb|BQ612070.1|BQ612070
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGGTAG                      
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAAC---T-Ggtaattttac ... gaacagg
EST: gi|31472042|gb|CD414070.1|CD414070
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGGTAG                      
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAAC---T-Ggtaattttac ... gaacagg
EST: gi|213602617|gb|DB978088.1|DB978088
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGGTAG                      
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAAC---T-Ggtaattttac ... gaacagg
EST: gi|193415814|gb|FK377568.1|FK377568
EST:     CCGGGACAGATTTTAACTGGTAG                      
genomic: CCGGGACAGATTTTAAC---T-Ggtaattttac ... gaacagg
EST: gi|51344791|gb|CO985524.1|CO985524
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG                         G
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttac ... gaacaggtag-
EST: gi|51344791|gb|CO985524.1|CO985524
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG                         G
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttac ... gaacaggtag-