1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAAATGTGAGGATATACTAAGCAAGCAACGCTATATATGTGGCAATACACTAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtgtgtgtttattatagggcatttactgttgacatttgggaatatcttatgtactttcttgttactcgtattatgcaaacctttgttggtcaa...
species | Glycine max |
transcript | GLYMA20G02490.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|209728830|gb|BW655472.1|BW655472
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|9204775|gb|BE330999.1|BE330999
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|192313119|gb|FK004695.1|FK004695
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|13791339|gb|BG653930.1|BG653930
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|21888923|gb|BQ742136.1|BQ742136
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|120490911|gb|EH219078.1|EH219078
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|209728829|gb|BW655471.1|BW655471
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTEST: gi|192307449|gb|FK000777.1|FK000777
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTT
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|120491356|gb|EH219523.1|EH219523
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|213596103|gb|DB975866.1|DB975866
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|192313120|gb|FK004696.1|FK004696
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCGEST: gi|15201916|gb|BI425126.1|BI425126
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
EST: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAG GTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
genomic: TAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtg ... ataattgtagGTTTATGCTGTTCACTTCAAGTGCAACAAGAAGCTGCTACGCGAATACCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATGTGAGGATATACTAAGCAAGCAACGCTATATATGTGGCAATACACTAACTGAAGCAGACATTCGTTTGTTTGTCACTCTTATTAGATTTGATGAGgtaaagtgtgtgtgtttattatagggcatttactgttgacatttgggaatatcttatgtactttcttgttactcgtattatgcaaacctttgttggtcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC