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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTTACCGAAATCATGTTGTGTCTGAGACTACCATTGCTACGCCCCAAAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttcttcaacaaacctctattttcctctcttgttttaggtatgcaataggcttgatgggaattcctgcatgttaaaatcggtagttttcatgaaa...

Basic information

species Glycine max
transcript GLYMA20G02490.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4260299|gb|AI416795.1|AI416795
EST:     AAAGCACTTTTCCTCCCTCTGAGTTTTGCTACAACTACTACCAGTACAAG                         CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|8283063|gb|BE020624.1|BE020624
EST:     AGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         ---ATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|16346566|gb|BI972161.1|BI972161
EST:     CTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: CTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|298165802|gb|HO008773.1|HO008773
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-                         C--A-AGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|192307448|gb|FK000776.1|FK000776
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|7692666|gb|AW760767.1|AW760767
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|209728829|gb|BW655471.1|BW655471
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-                         C--A-AGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|120491353|gb|EH219520.1|EH219520
EST:     CACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: CACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|213588695|gb|DB957580.1|DB957580
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-                         C--A-AGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|151396239|gb|EV266116.1|EV266116
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-                         C--A-AGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|151404135|gb|EV273945.1|EV273945
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: gi|298163642|gb|HO012375.1|HO012375
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT