1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaccaatttcatgttgaactaagtattgttttgctccattctttactttttgaagatttggtgctgtctgtgattggtttgtaaaatatattctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTGTGAGATCTGCTTCAACATTCAGAAATTGGATTTCGAGGGACC
species | Glycine max |
transcript | GLYMA20G02490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAGCACTTTTCCTCCCTCTGAGTTTTGCTACAACTACTACCAGTACAAG CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|8283063|gb|BE020624.1|BE020624
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG ---ATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|16346566|gb|BI972161.1|BI972161
genomic: AGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: CTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|298165802|gb|HO008773.1|HO008773
genomic: CTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A- C--A-AGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|192307448|gb|FK000776.1|FK000776
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|7692666|gb|AW760767.1|AW760767
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|209728829|gb|BW655471.1|BW655471
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A- C--A-AGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|120491353|gb|EH219520.1|EH219520
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: CACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|213588695|gb|DB957580.1|DB957580
genomic: CACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A- C--A-AGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|151396239|gb|EV266116.1|EV266116
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A- C--A-AGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|151404135|gb|EV273945.1|EV273945
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTEST: gi|298163642|gb|HO012375.1|HO012375
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
EST: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG CATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... ttctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGT
ctttttgaagatttggtgctgtctgtgattggtttgtaaaatatattctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTGTGAGATCTGCTTCAACATTCAGAAATTGGATTTCGAGGGACC
ttctgctt CT-rich tract
tttgtaaaatatattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccaatttcatgttgaactaagtattgttttgctccattctttactttttgaagatttggtgctgtctgtgattggtttgtaaaatatattctgcttagCATATAGTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTGTGAGATCTGCTTCAACATTCAGAAATTGGATTTCGAGGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - tcatgtt
- - - - - - - - - - - - - - - -tgctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtttg