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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttaatttttgtttttaaccatattgatatagacttcttaaattgataacttataattacactgaggttcttttctcattcaactctgcagAGAGCACAAGATCTAGCAAATGTAACTGCATATCGAGAATGGGTGTTATTTGGGTATCTTGTCTGTCCTGATGAACTGCGTCGTGTCACTAGCATTGATA

Basic information

species Glycine max
transcript GLYMA20G02370.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02370.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0011g01630.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------------gtaatgttaatt--tttgtttttaaccatattgatatagacttcttaaat---tgataacttataattacactgaggttcttttc--tcattcaactctgcagAGAGCACAAGATCTAGCAAATGTAACTGCATATCGAGAATGGGTGTTATTTGGGTATCTTGTCTGTCCTGATGAACTGCGTCGTGTCACTAGCATTGATA
                                         |  | |||  |  | ||| ||| |      | || |  ||| | ||| |   |  | | |||   ||| ||     |||  | |  |  ||      | |||||||| |||||| |||||||||| ||| | ||||| ||||||||  || |||| |||||||| ||||| ||||| || | |||||||||||||||||| |
gtagtactcactctcctggatgatcttgataaatgttaaaattttattacctgctgtgtctttgaattctctaatttgaactccctaattgagttgttagttaatgttatacattttttccatgcaattttttcctctttcagAGAGCTCAAGATTTAGCAAATGTTACTTCTTATCGGGAATGGGTACTACTTGGATATCTTGTTTGTCCAGATGAGCTACTTCGTGTCACTAGCATTGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaattgataacttataattacactgaggttcttttctcattcaactctgcagAGAGCACAAGATCTAGCAAATGTAACTGCATATCGAGAATGGGTGTTATTTGGGTATCTTGTCTGTCCTGATGAACTGCGTCGTGTCACTAGCATTGATA
       tgataac  putative branch site (score: 2)
                               ttcttttctcattca  putative PPT
     attgataacttataat  TA-rich tract