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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaaaatttttaatagatgtcctaacattggaaataaactaataagtaattagttaataatttgtgcatatctcaaataacttggcagtgttttgcagCCCCATCAGAATTCTCTTATACTACATGCATTTATGGATCTATTCTGTTCCTTTGTGCGGGTTAACCTTTTCTCTGAAAAGGCAA

Basic information

species Glycine max
transcript GLYMA20G02370.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02370.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0011g01630.t01 (Vitis vinifera), 3'ss of exon 3
gtttaaaatttttaatagatgtc-ctaacattggaaataaactaataagtaattagttaataatttgtgcatatctcaaataacttggc--agtgttttgcagCCCCATCAGAATTCTCTTATACTACATGCATTTATGGATCTATTCTGTTCCTTTGTGCGGGTTAACCTTTTCTCTGAAAAGGCAA--------------
   ||||  |    ||   | |  ||    || || ||| |   |    ||||  ||   |  | | || |||| || |||   ||||   ||| |||||||||| |||||||| || || ||||||||||| || |||||||| || ||||||||||| || ||||| || || ||||| |||||||              
--ctaaatctgggcatgcttttttcttttttttgatatagatggaagcataatgcgtagtttgtgtatg-atatttctaatggattggtgaagtattttgcagCCTCATCAGAACTCACTCATACTACATGCGTTCATGGATCTCTTTTGTTCCTTTGTCCGTGTTAATCTCTTTTCTGAGAAGGCAAGTCCACTTCATGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtaattagttaataatttgtgcatatctcaaataacttggcagtgttttgcagCCCCATCAGAATTCTCTTATACTACATGCATTTATGGATCTATTCTGTTCCTTTGTGCGGGTTAACCTTTTCTCTGAAAAGGCAA
                               aaataac  putative branch site (score: 2)
     attagttaataatttg  TA-rich tract