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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTCATATGTCAGCCGAAGCTAGTATCAAGTCCACACTGCAGTTATTTGTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatatatatatatatatatatatatatatatatatatatatatatatatatatgattttgttgaaacacaaatgactatacacttttgtaaacta...

Basic information

species Glycine max
transcript GLYMA20G02370.1
intron # 23
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193336062|gb|FK297612.1|FK297612
EST:     AAACTTCTTCTTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG                         ATCTCATCTCGTAGCACAACTTATCT
genomic: AAACT-CT-CT-GCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCT
EST: gi|58019960|gb|CX706702.1|CX706702
EST:     GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG                         ATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
EST: gi|193475994|gb|FK441291.1|FK441291
EST:     GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG                         ATCTCATCTCG
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCG
EST: gi|7685519|gb|AW756167.1|AW756167
EST:     GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG                         ATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
EST: gi|208214546|gb|GE011981.1|GE011981
EST:     GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG                         ATCTCATCTCGTAGCACAACTTATC
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATC
EST: gi|26056306|gb|CA799220.1|CA799220
EST:     GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG                         ATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
EST: gi|193396488|gb|FK363236.1|FK363236
EST:     GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG                         ATCTCAATACTCGTAAGACACAACTTATCT
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCA-T-CTCGTA-G-CACAACTTATCT
EST: gi|51345056|gb|CO985789.1|CO985789
EST:     GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG                         ATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGTCATATGTCAGCCGAAGCTAGTATCAAGTCCACACTGCAGTTATTTGTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatatatatatatatatatatatatatatatatatatatatatatatatatatgattttgttgaaacacaaatgactatacacttttgtaaacta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG