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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatgttatattttattttgttcaattttacgagggcagaataaattagatgagttccccacacacaccccacaaaaatttccccttcccttggcatata...

Basic information

species Glycine max
transcript GLYMA20G02130.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g38490.1 (Oryza sativa), 5'ss of exon 9
TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatgttatattttattttgttcaattttacgagggcagaat--aaattagat-gagttccccac---acacaccccacaaaaatttccccttcccttggcatata
| ||  |||||||||| ||||||||||||| ||| ||||| | ||||||||||||||| ||  | ||  | ||  |||| ||||| |||||   ||| ||||||| | |  |    |   || | ||||| |         |  |      || |  ||  | ||   | | ||  ||     ||   |  ||  ||  |      
TCCTTATGGGTCACAGGAGATACTTGTATGCTGGGCATTCAAGGACAATTAAACCAGACAAAAGAAAACTAGCCATACTATTTGACAATCCACGTATTGGgtatgatgttgtgccgtgcatttacttttatgtacttttttttcaggccgtatagcattttctacgctataaacttcatgttgatagtcaattttctctg------

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 9
lower sequence: AC213621.5_FGT002 (Zea mays), 5'ss of exon 10
TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatgttatattttattttgttcaattttacgagggcagaataaattagatgagttccccacacacaccccacaaaaatttccccttcccttggcatata
||||  |||||||||| ||||||||||||||||| ||||| || |||||||||||||| ||  | | | | ||  |||| || ||||||||   ||||||||| | || |   || || || ||      ||||     |  |   | ||  |  |        | |   |||||   |||   | |||   |       
TTCTTATGGGTCACAGGAGATACTTGTATGGTGGGCATTCAAAAACAATTAAACCAGACAAAAGAAGGCTTGCTGTACTCTTGGATAATCCACGTATAGGgtaggata-acactactt-gtccat-----cgagttttaagca--cttgaccatcttatttgttaaaaatcacaatt-tttattcatccgcag-------

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G148619_T01 (Zea mays), 5'ss of exon 3
TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatgtta-tattttattttgttcaattttacgagggcagaataaattagatgagttccccacacacaccccacaaaaatttccccttcccttggcatata
||||  |||||||||| ||||||||||||||||| ||||| || |||||||||||||| ||  | | | | ||  |||| ||  |||||||   ||||||||||| ||  | |   | |   || | |||   ||  |    |  |  |  | | ||    | | |        | || |||       ||   |      
TTCTTATGGGTCACAGGAGATACTTGTATGGTGGGCATTCAAAAACAATTAAACCAGACAAAAGAAGGCTTGCTGTACTCTTCAATAATCCACGTATAGGgtatgataacactacttgtccatcgagttt-taagcac----ttgaccatcttatttgttaaaata--------acaatttttattcatccgcag------

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G419739_T01 (Zea mays), 5'ss of exon 9
TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatgtta-tattttattttgttcaattttacgagggcagaataaattagatgagttccccacacacaccccacaaaaatttccccttcccttggcatata
|| |  |||||||||| ||||||||||||||||| ||||| || |||||||||||||| ||  | | | | ||  |||| ||  |||||||   ||||||||||| ||  | |   | |   || | |||   ||  |    |  |  |  | | ||    | | |        | || |||       ||   |      
TTTTTATGGGTCACAGGAGATACTTGTATGGTGGGCATTCAAAAACAATTAAACCAGACAAAAGAAGGCTTGCTGTACTCTTCAATAATCCACGTATAGGgtatgataacactacttgtccatcgagttt-taagcac----ttgaccatcttatttgttaaaata--------acaatttttattcatccgcag------

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G170936_T01 (Zea mays), 5'ss of exon 5
TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatg-ttatattttattttgttcaattttacgagggcagaataa---attagatgagttccccacacacaccccacaaaaatttccccttcccttggcatata
||||  |||||||||| ||||||||||||||||| ||||| || |||||||||||||| ||  | | | | ||  |||| ||  |||||||   ||||||||||| | | | |   | |   || | |||         ||  |    ||| | | |  |  | |     |  |  |   |  |   |         ||     
TTCTTATGGGTCACAGGAGATACTTGTATGGTGGGCATTCAAAAACAATTAAACCAGACAAAAGAAGGCTTGCTGTACTCTTCAATAATCCACGTATAGGgtatgataacactacttgtccatcgagttttaagcacttgaccatcttatttgttaaaataacaatttttattcatccgcaggtggacggcattgaagcg----

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G382792_T02 (Zea mays), 5'ss of exon 9
TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatg-ttatattttattttgttcaattttacgagggcagaataaattagatgagttccccacacacaccccacaaaaatttccccttcccttggcatata-
| ||  |||||||||| ||||||||||||||||| ||||| || ||||| |||||||| ||  | | | | |   |||| |||||||||||   ||||||||||| |||    |  || |    | | ||     ||   |          | |   |    ||           |||||  |   || |  |    |  | 
TCCTTATGGGTCACAGGAGATACTTGTATGGTGGGCATTCAAAAACAATCAAACCAGACAAAAGAAGGCTTGTCGTACTCTTTGATAATCCACGTATAGGgtatgattaacactagttgtccatagtgttgttttggtttatcttgagttctaaacacttgccatcttgtttgttaaaatcacaattttcacttatgtgcag

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G094771_T01 (Zea mays), 5'ss of exon 9
TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatgttatattttattttgttcaat------tttacgagggcagaataaattagatgagttcccca---cacacaccccacaaaaatttccccttcccttggcatata---------------------------------------------------------------------
||||  | || || |||||||||||||||||||| ||| | ||||||||||| || |||||  | |  |||||  |||| ||||||| |||   ||| |||||||||   |    || | |||| |       | |  |    | | |   |||  |   |   |     || || |   |  | |  ||    |  | ||  | |                                                                        
TTCTTATTGGGCATAGAAGATACTTGTATGGTGGCCATGCGAAGACAATTAAGCCCGATAAAAGAAGATTGGCTATACTCTTTGATAGTCCACGTATTGGgtatgttcagtgcccttatattcagtgccatactcattattagacatttgtttatctttatcttcagtgccatactcattattagaggtttggttatctttatcttcagtgccgttatattctcaactctcaaacatgaaattttcagcttgttaatatcagttttggttgtgtgcag

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0011g05000.t01 (Vitis vinifera), 5'ss of exon 9
TTCTGCTGGGTCACAGAAGATACTTGTATGGTGGACATTCCAAGACAATTAAACCAGATAAGCGGAAGTTGGCGTTACTGTTTGATAATCCCAATATAGGgtatgt-tatattttattttgttcaattttacgagggcagaataaattagatgagttccccacacacaccccacaaaaatttccccttcccttggcatata---
||||  |||| |||||||| ||| ||||||| ||||| ||||| ||| |||  || || ||||| ||||| || ||||||||||| ||||| ||||| |||||||  |  || | || |   | | ||       |||  ||    |  |  ||||     | |   |    | |||| | |     |||||    | | |   
TTCTAATGGGCCACAGAAGGTACCTGTATGGAGGACACTCCAAAACAGTTAGGCCGGACAAGCGAAAGTTAGCATTACTGTTTGACAATCCTAATATTGGgtatgcatccatctcatatctgtaagttaccatttggctcaagtgctgggtggagtg----aaatggaattgataaaactgttaggatccctcttgagacagca