Sequence
atgc intronic sequence ATGC exonic sequence...tttcttggttgcagggaatttcttgatgtttttaatgattttgatcaaggtattcattttgaaataatctaaactgatctataatgtttcatgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAATGATGTACGGGTGGTTGACAAGATTCCTGAGTACCTAATGGAAAGATTT
Basic information
species | Glycine max |
transcript | GLYMA20G02130.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02130.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G01480.1 (Arabidopsis thaliana), 3'ss of exon 4
tttcttggttgcagggaatttcttgatgtttttaatgattttgatcaaggtattcattttgaaataatctaaactgatctataatgtttcatgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAATGATGTACGGGTGGTTGACAAGATTCCTGAGTACCTAATGGAAAGATTT
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gttttagattgctt----tcttctgaaaatcttgtttgtgcaaatcaaagccatcttttgtagattgcttt--ctgacagaggtttttct-----ttcagTAAATTTGGGGACATCTACGATGAAGAGTTCTTTGTCAGTACCTTATCAAATGATGTGCGGGTGGTTGATACAATTCCTGAATATCTAATGGAGCGTTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12490081|gb|BG043602.1|BG043602EST: ACCCTTGTATTCCCCAACTTTCATTA-CATAGCATATGGAAAGATCCCAG CAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAA
genomic: ACCCTTGTATTCCCCAACTTTCATTATCATAGCATATGGAAAGATCCCAGgttggtttgt ... atgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaggtattcattttgaaataatctaaactgatctataatgtttcatgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAATGATGTACGGGTGGTTGACAAGATTCCTGAGTACCTAATGGAAAGATTT
aactgat putative branch site (score: 3)
tattcattttgaaata TA-rich tract