Sequence
atgc intronic sequence ATGC exonic sequenceTAGAGAAAGAGGTTGGAAAGGGAAATTTACAAAACCAGGACGAGTTATACGTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAGgtaaatgtctgcttaaagctctagtgattttagcctgtatgaagaggaagaaaaattcagggagtgctttctttttggatgttgctagtctagcaaggag...
Basic information
species | Glycine max |
transcript | GLYMA20G02130.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G094771_T01 (Zea mays), 5'ss of exon 7
TAGAGAAAGAGGTTGGAAAGGGAAATTTACAAAACCAGGACGAGTTATACGTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAGgtaaatgtctgcttaaagctctagtgattttagcctgtatgaagaggaagaaaaattc------agggagtgctttctttttggatgttgctagtctagcaaggag---------
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TAGGGAAAAAGGTTGGAGAGGGAAATTTACAAGGCCAGGACGTGTAATAAGGCCTGGAGCAATAAGGATGAATGGGAAATGTCCACTGACTCCTTTGGAGgtatgtctgtatttaaaaga-tggtgtttctgcttggaaagaagcttcatgaattttatcttcaagcaaatatgacgattctgaacctttacatgcttgtacttgtgctgcttag
upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G14970.1 (Arabidopsis thaliana), 5'ss of exon 7
TAGAGAAAGAGGTTGGAAAGGGAAATTTACAAAACCAGGACGAGTTATACGTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAGgtaaatgtc--tgcttaaagctctagtgatt--ttagcctgtatgaagaggaagaaaaattcagggagtgctttctttttggatgttgctagtctagcaaggag
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TAGAGAACGAGGATGGAAAGGGAAGTTCACAAAACCGGGCCGTGTGATACGACCAGGAGCTAACAGGCTCAATGGGAAATGCCCTTTAACTCCTTTAGAGgtaagcataaatactttagaacctggacattactctacttatccacgattgtggtctatattaagtattagtgt-tacgagaatattgtt-gtatattattt--
upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g05000.t01 (Vitis vinifera), 5'ss of exon 7
TAGAGAAAGAGGTTGGAAAGGGAAATTTACAAAACCAGGACGAGTTATACGTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAGgtaaatgtctgcttaaagctctagtgat-tttagcctgtatgaagaggaagaaaa----attcagggagtgctttctttttggatgttgctagtctagcaaggag
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AAGGGAAAGAGGTTGGAGGGGAAAGTTTACAAAACCTGGTCGGGTTATACGACCTGGAGCAATCAGGATTAATGGAAAATGCCCTCTTACTCCTTTAGAGgtaa-tatctgtcacctttttaagttccattttttctttattgggatgcttaaacttctatttctgcggtttctgtttttcaaactctgtta-ttttgcaat---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6134628|gb|AW133021.1|AW133021EST: GTCCAGGAGCAATCAGGATCAATTGGAAGTGTGCACTTACCCCATTAGAG GTTTGCCTCATGCTTTAGGGGAATGGGTTTCACGACGA-CACATTTATCCT
genomic: GTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAGgtaaatgtct ... atctcttcagGTTGGCCTCATGCTT-AGGGGAATGGGTTTCACGAAGAACACATCTATCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGAGAAAGAGGTTGGAAAGGGAAATTTACAAAACCAGGACGAGTTATACGTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAGgtaaatgtctgcttaaagctctagtgattttagcctgtatgaagaggaagaaaaattcagggagtgctttctttttggatgttgctagtctagcaaggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA