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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttataacgtttgtactcttatgttattcgaccactccattgatttatactatgattttgacttgagatacttctagAATTATTCTTCCAGGATGGCTGCTATTGATTACACAGTTTGTCTTCACAGTGAGGTGTTTGTCACAACTCAGGGAGGCAACTTCCCTCATTTTCTGCTGG

Basic information

species Glycine max
transcript GLYMA20G02130.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02130.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G14970.1 (Arabidopsis thaliana), 3'ss of exon 8
gttataacgtttgtactcttatgttattcgaccactcc--attgatttatactatgattttgacttgagatact---tctagAATTATTCTTCCAGGATGGCTGCTATTGATTACACAGTTTGTCTTCACAGTGAGGTGTTTGTCACAACTCAGGGAGGCAACTTCCCTCATTTTCTGCTGG
         | |    | ||    | || |  ||  |   ||   |   | ||    | |  ||||  |   ||   | ||||| |  || || || |||||||| || |||||||| || ||||| ||||||||||| ||||| ||||| || || || |||||||||||||| ||  |||
------gtttctacgattttccactgtttgttcatccaggatgagtcctttctgacttgtaaacttatgtgtctgtgtttagAACTTCTCCTCGAGAATGGCTGCAATAGATTACACGGTGTGTCTCCACAGTGAGGTATTTGTGACAACACAAGGTGGAAACTTCCCTCATTTCCTCATGG

upper sequence: GLYMA20G02130.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G01480.1 (Arabidopsis thaliana), 3'ss of exon 8
-gttataacgtttgtactcttatgttattcgaccactccattgatttatactatgattttgacttgagatact---tctagAATTATTCTTCCAGGATGGCTGCTATTGATTACACAGTTTGTCTTCACAGTGAGGTGTTTGTCACAACTCAGGGAGGCAACTTCCCTCATTTTCTGCTGG
  ||    | ||  |  | || ||||          |   | |   |  |  || | | |||||||| |  ||   |  ||||||  |||||||| |||||||| || |||||||| || ||||| ||||||||||| ||||| || || || || || ||||| |||||||| ||  |||
gtttgcttctttcctggtgtt-tgttccagagtatatttctcgtgatgaatgataaatctgacttgaaactctgtgttcagAATTTCTCTTCCAGAATGGCTGCAATAGATTACACGGTCTGTCTCCACAGTGAGGTATTTGTGACCACGCAAGGTGGAAACTTTCCTCATTTCCTCATGG

upper sequence: GLYMA20G02130.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0011g05000.t01 (Vitis vinifera), 3'ss of exon 8
gttataacgtttgtactcttatgttat--tcgaccact--ccattgatttat-actatgattttgacttgagatact---tctagAATTATTCTTCCAGGATGGCTGCTATTGATTACACAGTTTGTCTTCACAGTGAGGTGTTTGTCACAACTCAGGGAGGCAACTTCCCTCATTTTCTGCTGG
||   |  |||   | | ||||   ||  ||      |   |  |||||||    | |   ||||||||| | | ||   ||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| || || |||||||||||||||||  |||
gtacgagtgttgccagttttattcaatcttcagtttgtgatctctgatttaccgatgttgatttgacttgggttgctgcttctagAACTATTCTTCCAGGATGGCTGCTATAGACTACACTGTTTGTCTTCACAGTGAAGTATTTGTGACAACTCAAGGTGGAAACTTCCCTCATTTTCTAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattcgaccactccattgatttatactatgattttgacttgagatacttctagAATTATTCTTCCAGGATGGCTGCTATTGATTACACAGTTTGTCTTCACAGTGAGGTGTTTGTCACAACTCAGGGAGGCAACTTCCCTCATTTTCTGCTGG
                                 ttttgac  putative branch site (score: 3)
                                              tacttct  putative PPT
                attgatttatactatg  TA-rich tract