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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcatgagtttgaattgagatggctttactagtcttgtgtgtttccttttgcttcttgagataccttctctgagtctgacttgccgttcttttattgcagTGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGGCTTATCTGTATTTCTTGTATTTTCTTCGTAATATAGTGGTGTAGCTCGC

Basic information

species Glycine max
transcript GLYMA19G36410.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342617|gb|CO983585.1|CO983585
EST:     GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA                         TGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGG
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAAgtaaggttcc ... tttattgcagTGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGG
EST: gi|254347019|gb|GR856689.1|GR856689
EST:     GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA                         TGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGG
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAAgtaaggttcc ... tttattgcagTGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGG
EST: gi|254344182|gb|GR855267.1|GR855267
EST:     GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA                         TGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGG
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAAgtaaggttcc ... tttattgcagTGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGG
EST: gi|254329340|gb|GR833712.1|GR833712
EST:     GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA                         TGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGG
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAAgtaaggttcc ... tttattgcagTGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgcttcttgagataccttctctgagtctgacttgccgttcttttattgcagTGTGCTAAAGAAATGATACGGCATAGAAGACCATGGGATCAATTTGTATGGCTTATCTGTATTTCTTGTATTTTCTTCGTAATATAGTGGTGTAGCTCGC
                            gtctgac  putative branch site (score: 3)
                                  cttgccgttctttt  CT-rich tract
                                         ttcttttatt  TA-rich tract