1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGGAAATTTGATGATGAATACTTCCAACAAACTGAAGAATCAAGTCGATTCAGGCAAGAGTACGAAATGCGTAAAATGAAACAGGCAAgtaacttttagcagttgcgaccagaaagactgacagttttttctatcgtcttttgcatgatatatacatacgtacatacatacatagatatatacatacatacatatatatatatgttgaatgttgttctagacatggtttcaaatctaattatgtggaccatttttaggatcaag
species | Glycine max |
transcript | GLYMA19G36410.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGTCGATTCAGGCAAGAGTACGAAATGCGTAAAATGAAACAGGATCAAEST: gi|254347019|gb|GR856689.1|GR856689
genomic: AAGTCGATTCAGGCAAGAGTACGAAATGCGTAAAATGAAACAGG--CAA
EST: ATGCGTAAAATGAAACAGGATCAAG GTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATEST: gi|254347019|gb|GR856689.1|GR856689
genomic: ATGCGTAAAATGAAACAGG--CAA-gtaactttta ... taggatcaagGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACAT
EST: ATGCGTAAAATGAAACAGGATCAAG GTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATEST: gi|254344182|gb|GR855267.1|GR855267
genomic: ATGCGTAAAATGAAACAGG--CAA-gtaactttta ... taggatcaagGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACAT
EST: ATGCGTAAAATGAAACAGGATCAAG GTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATEST: gi|254344182|gb|GR855267.1|GR855267
genomic: ATGCGTAAAATGAAACAGG--CAA-gtaactttta ... taggatcaagGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACAT
EST: ATGCGTAAAATGAAACAGGATCAAG GTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATEST: gi|21601172|gb|BQ611503.1|BQ611503
genomic: ATGCGTAAAATGAAACAGG--CAA-gtaactttta ... taggatcaagGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACAT
EST: AAGTCGATTCAGGCAAGAGTACGAAATGCGTAAAATGAAACAGGATCAA
genomic: AAGTCGATTCAGGCAAGAGTACGAAATGCGTAAAATGAAACAGG--CAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGAAATTTGATGATGAATACTTCCAACAAACTGAAGAATCAAGTCGATTCAGGCAAGAGTACGAAATGCGTAAAATGAAACAGGCAAgtaacttttagcagttgcgaccagaaagactgacagttttttctatcgtcttttgcatgatatatacatacgtacatacatacatagatatatacatacatacatatatatatatgttgaatgttgttctagacatggtttcaaatctaattatgtggaccatttttaggatcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA