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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGACGTCGAAAAGCAAAGGGACTCCAATCTCTCCGCCGACGATGCATTCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAGgtcacactttccttcattctttttcaaattcattactaaatgagcgaatttgtgccctaattcatgagaattttcgatttttttttcatctcccaaacatgtgtgacaatgtgtggaatcaattttgtgcag

Basic information

species Glycine max
transcript GLYMA19G36410.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254329339|gb|GR833711.1|GR833711
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAG                         AAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAGgtcacacttt ... ttttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATC
EST: gi|13312129|gb|BG405780.1|BG405780
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAG                         AAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGG
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAGgtcacacttt ... ttttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGG
EST: gi|21601172|gb|BQ611503.1|BQ611503
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAG                         AAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAGgtcacacttt ... ttttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATC