1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agttgcattgttcattgagaacagcaaaattgttctttctggtattactaccactggctgactcatttaattttttcttgcattttttgttggctttcagGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGATGTAGATAACATGAGTTATGAG
species | Glycine max |
transcript | GLYMA19G36400.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAG GGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTEST: gi|19934593|gb|BQ079623.1|BQ079623
genomic: ATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAGgtatcttttg ... tggctttcagGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTT
EST: ATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAG GGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTEST: gi|10253219|gb|BE820985.1|BE820985
genomic: ATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAGgtatcttttg ... tggctttcagGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTT
EST: TCGATCATTNNNTGAGGAGAGGTGGTCTCCATGATCGATTTTCCTCTGAG GGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTEST: gi|209725622|gb|BW663111.1|BW663111
genomic: TCGATCATTGACTGAGGAGA-GTGGTCTCCATGATCGATTTTCCTCTGAGgtatcttttg ... tggctttcagGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTT
EST: ATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAG GGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTEST: gi|254338521|gb|GR849939.1|GR849939
genomic: ATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAGgtatcttttg ... tggctttcagGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTT
EST: ATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAG GGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAG-AATATGCTT
genomic: ATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAGgtatcttttg ... tggctttcagGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTT
tactaccactggctgactcatttaattttttcttgcattttttgttggctttcagGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGATGTAGATAACATGAGTTATGAG
ttttttcttgcatttt CT-rich tract
atttaattttttcttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgcattgttcattgagaacagcaaaattgttctttctggtattactaccactggctgactcatttaattttttcttgcattttttgttggctttcagGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGATGTAGATAACATGAGTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA