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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttcgtttttttctttcatcccgtttttatttccgatgtatatttttttttaattttaaattttttggattttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCGGAACTATAAG

Basic information

species Glycine max
transcript GLYMA19G36080.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171848|gb|HO021440.1|HO021440
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|298186201|gb|HO036834.1|HO036834
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|19270375|gb|BM886631.1|BM886631
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|19270064|gb|BM886320.1|BM886320
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|213594334|gb|DB969984.1|DB969984
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|208133633|gb|GD929522.1|GD929522
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|213590581|gb|DB973326.1|DB973326
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|13252020|gb|BG362914.1|BG362914
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|208268036|gb|GE070739.1|GE070739
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|193389371|gb|FK353976.1|FK353976
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|213600537|gb|DB960085.1|DB960085
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|209727125|gb|BW663267.1|BW663267
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|9204038|gb|BE330262.1|BE330262
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|209701114|gb|BW652642.1|BW652642
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|207823570|gb|GD794147.1|GD794147
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|19452928|gb|BM954338.1|BM954338
EST:     CTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|19934788|gb|BQ079818.1|BQ079818
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
EST: gi|298180090|gb|HO025305.1|HO025305
EST:     CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAG                         GTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG
genomic: CCTCTAACTTCCACCTCTGAGCCACCTTCTCTCTTTGACGGAACCACCAGgtgcttcgtt ... tttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttccgatgtatatttttttttaattttaaattttttggattttcttttagGTTGTACATCAGTTATATTTGTCCCTATGCGCAGCGTGTTTGGATCACTCGGAACTATAAG
                      ttttaat  putative branch site (score: 3)
                                            ttttctttt  putative PPT
             tatatttttttttaat  TA-rich tract