Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCAAACTCACTTGAATTGAATGTAGACGCCATTCTGCACCGAGATTCATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacacttcttcattcattatcgctagtgaattattcatgaattatgatctgcagttagtttttaatttgaaatcggttcctcttcttcgttatttag

Basic information

species Glycine max
transcript GLYMA19G36080.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171848|gb|HO021440.1|HO021440
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|298186201|gb|HO036834.1|HO036834
EST:     GTTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|19270375|gb|BM886631.1|BM886631
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|19270064|gb|BM886320.1|BM886320
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|213594334|gb|DB969984.1|DB969984
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|208133633|gb|GD929522.1|GD929522
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCCTCTAACTTCCACCTCTGAGCCAC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTT-CCCCCTCTAACTTCCACCTCTGAGCCAC
EST: gi|213590581|gb|DB973326.1|DB973326
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|13252020|gb|BG362914.1|BG362914
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|208268036|gb|GE070739.1|GE070739
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|193389371|gb|FK353976.1|FK353976
EST:     TTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: TTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|213600537|gb|DB960085.1|DB960085
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|209727125|gb|BW663267.1|BW663267
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|9204038|gb|BE330262.1|BE330262
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|207823570|gb|GD794147.1|GD794147
EST:     CCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: CCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|19934788|gb|BQ079818.1|BQ079818
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
EST: gi|298180090|gb|HO025305.1|HO025305
EST:     ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGC                         TGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC
genomic: ATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacact ... cgttatttagTGGCGTGCAAGAAGTTCGTGTTCCCCCTCTAACTTCCACCTCTGAGCCACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGCAAACTCACTTGAATTGAATGTAGACGCCATTCTGCACCGAGATTCATTCTTCACCAAAACTTCGCAAAGAAACACTACACATCCATGGCAACTGCgtaagacacttcttcattcattatcgctagtgaattattcatgaattatgatctgcagttagtttttaatttgaaatcggttcctcttcttcgttatttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA