1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTCCTGAGCTGCATGTAGAAATCCATAAGCAGGGATTTGGTCAGCAGCAGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttcaaagtttttgttgtctctcttgaccctgtgattattttgtatcaagtttttgtagttaatctctgattgtatatttttttcatgattttt...
species | Glycine max |
transcript | GLYMA19G17930.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGG-TACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|8284555|gb|BE022123.1|BE022123
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: GCAAGCGGCAGCAACAGCTGGATCTTCTACTTTCTGCT-CGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTEST: gi|15664573|gb|BI701944.1|BI701944
genomic: GCAGGCGGCAGCAACAGCTGGATCTTCTACTT-CTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGT
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|20498591|gb|BQ273521.1|BQ273521
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATAEST: gi|31458839|gb|CD400867.1|CD400867
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATA
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTTGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|19269795|gb|BM886051.1|BM886051
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|13252576|gb|BG363479.1|BG363479
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|151401792|gb|EV271605.1|EV271605
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|192312150|gb|FK005649.1|FK005649
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAGGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|21602124|gb|BQ612455.1|BQ612455
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|151394370|gb|EV264241.1|EV264241
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGGTCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|10237666|gb|BE806554.1|BE806554
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|58024209|gb|CX710950.1|CX710950
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|120496919|gb|EH225086.1|EH225086
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|10253915|gb|BE821730.1|BE821730
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGNANGCGGCNGNNNCAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGANCTGAAGTATGACATATTTGGATGGEST: gi|192312151|gb|FK005650.1|FK005650
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAGGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|14991587|gb|BI317260.1|BI317260
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|58016306|gb|CX703048.1|CX703048
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGEST: gi|8282903|gb|BE020464.1|BE020464
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGG
EST: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAG ACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATA
genomic: AGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttc ... tatttttcagACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCCTGAGCTGCATGTAGAAATCCATAAGCAGGGATTTGGTCAGCAGCAGCAGGCGGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGGGTACAAAGgtaatacttcaaagtttttgttgtctctcttgaccctgtgattattttgtatcaagtttttgtagttaatctctgattgtatatttttttcatgattttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA