Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttcatatgaattggttgatgcttgttagattgggaaatagaatttttttttgccattttttggaaaaattatgcgtttttccccctaatttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG

Basic information

species Glycine max
transcript GLYMA19G17930.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098990|gb|HO760831.1|HO760831
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|27425559|gb|CA937079.1|CA937079
EST:     CAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|8284555|gb|BE022123.1|BE022123
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|20498591|gb|BQ273521.1|BQ273521
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|23729216|gb|BU762696.1|BU762696
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|192312150|gb|FK005649.1|FK005649
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|151394370|gb|EV264241.1|EV264241
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|10237666|gb|BE806554.1|BE806554
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|120496919|gb|EH225086.1|EH225086
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|192312151|gb|FK005650.1|FK005650
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|5753434|gb|AI960721.1|AI960721
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|209701888|gb|BW683166.1|BW683166
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|58016306|gb|CX703048.1|CX703048
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         -ACTTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAG
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAAC-TTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAG
EST: gi|8282903|gb|BE020464.1|BE020464
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
EST: gi|20498257|gb|BQ273187.1|BQ273187
EST:     CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGAT                         AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT
genomic: CTCGCAAGGCCGCAGAAGCTGAATACGAGAAGAACCCTCTCGATGCCGATgttcgtttat ... atttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttgccattttttggaaaaattatgcgtttttccccctaatttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG
                                        ccctaat  putative branch site (score: 3)
                                 tttttccccctaattt  CT-rich tract
            attttttggaaaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attttcatatgaattggttgatgcttgttagattgggaaatagaatttttttttgccattttttggaaaaattatgcgtttttccccctaatttctgcagAACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - -aaatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc