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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaattcactatgccctaggtatttttttactcaattgttttttcggttaattaagggcctgtttgtcacaggtttttttctctccataaaaca...

Basic information

species Glycine max
transcript GLYMA19G17930.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098990|gb|HO760831.1|HO760831
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|27425559|gb|CA937079.1|CA937079
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|8284555|gb|BE022123.1|BE022123
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|20498591|gb|BQ273521.1|BQ273521
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|19269795|gb|BM886051.1|BM886051
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|23729216|gb|BU762696.1|BU762696
EST:     GAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAATTATTATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: GAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAA-GAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|13252576|gb|BG363479.1|BG363479
EST:     AGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|151401792|gb|EV271605.1|EV271605
EST:     GAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: GAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|192312150|gb|FK005649.1|FK005649
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|13240002|gb|BG359311.1|BG359311
EST:     TTGTCTCACTTTCTCAGTTTTTCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: TTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|151394370|gb|EV264241.1|EV264241
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|10237666|gb|BE806554.1|BE806554
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|120496919|gb|EH225086.1|EH225086
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|192312151|gb|FK005650.1|FK005650
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|5753434|gb|AI960721.1|AI960721
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|209701888|gb|BW683166.1|BW683166
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|58016306|gb|CX703048.1|CX703048
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCNTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|8282903|gb|BE020464.1|BE020464
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
EST: gi|20498257|gb|BQ273187.1|BQ273187
EST:     AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAG                         AGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG
genomic: AGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaa ... ggatttacagAGGCTGTTTCGAAGCTAGAGGAGGCGCTTGCAGTGAATCCCAAGAAGCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTTAACAAGATGGGGTGGAGCTCTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGgtactgctaattcactatgccctaggtatttttttactcaattgttttttcggttaattaagggcctgtttgtcacaggtttttttctctccataaaaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctctcc