1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactttttttggtttggtgtcaataactgtgagtgatttgggaattattttacttgtagaaataatgtgtaacgaaatagttttgttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
species | Glycine max |
transcript | GLYMA19G17930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|8284555|gb|BE022123.1|BE022123
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAAEST: gi|20498591|gb|BQ273521.1|BQ273521
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|31458839|gb|CD400867.1|CD400867
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|19269795|gb|BM886051.1|BM886051
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|23729216|gb|BU762696.1|BU762696
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|13252576|gb|BG363479.1|BG363479
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|151401792|gb|EV271605.1|EV271605
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|192312150|gb|FK005649.1|FK005649
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|13240002|gb|BG359311.1|BG359311
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|151394370|gb|EV264241.1|EV264241
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|10237666|gb|BE806554.1|BE806554
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|105633785|gb|DW247148.1|DW247148
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: ACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|58024209|gb|CX710950.1|CX710950
genomic: ACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGTTAAGEST: gi|120496919|gb|EH225086.1|EH225086
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|192312151|gb|FK005650.1|FK005650
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|5753434|gb|AI960721.1|AI960721
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|14991587|gb|BI317260.1|BI317260
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|58016306|gb|CX703048.1|CX703048
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|8282903|gb|BE020464.1|BE020464
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGEST: gi|20498257|gb|BQ273187.1|BQ273187
genomic: AGGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGTTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
EST: GGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTGGTTGATGAG GATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
genomic: GGTTTATTTTGATAAGGCAGCTGTGTACTTTCAGCAAGCTG-TTGATGAGgtactttttt ... ttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
ggaattattttacttgtagaaataatgtgtaacgaaatagttttgttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
gtgtaac putative branch site (score: 3)
ttttgtttt putative PPT
tattttacttgtagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttttttggtttggtgtcaataactgtgagtgatttgggaattattttacttgtagaaataatgtgtaacgaaatagttttgttttatgtagGATCCTTCAAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
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