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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttcttgttgagtgctttggttggttgttattggaagaaatgtgtgattttgattgtgtttcgtgattgaaatcatgttgcttcttctgctatgggtctgattttttgttggtgcttgttcgtgtttagGCCAAGTTTTGGAGGCAATATGTGGAGGCACATATGGCTGCAAATAATGATGATGCTACAAAACAGATTTTTAGTCGGTGCTTGTTGAATTGTCTTCAGA

Basic information

species Glycine max
transcript GLYMA19G14930.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G14930.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G17760.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtgttcttgttgagtgctttggttggttgttattggaagaaatgtgtgattttgattgtgtttcgtgattgaaatcatgttgcttcttctgctatgggtctgattttttgttggtgcttgttcgtgtt-tagGCCAAGTTTTGGAGGCAATATGTGGAGGCACATATGGCTGCAAATAATGATGATGCTACAAAACAGATTTTTAGTCGGTGCTTGTTGAATTGTCTTCAGA
                                                 || | |||     ||  |  || ||  |   || ||     ||     |||  | || ||  ||||  |  | | |      | ||||| |  ||||||| |||||||||||||||||| ||||||| ||| |||||||||||||| |||||||| |||||||| || |||||||  || |||||  
-------------------------------------------------gtaagtttc-ccatgactt-tgcttccacgtattttaagagtttcctgatgtttttggttaattgtgagctcctttgtactctgtagGCGAGATTTTGGAAGCAATATGTGGAGGCACAGATGGCTGTAAACAATGATGATGCTACCAAACAGATATTTAGTCGTTGTTTGTTGACCTGCCTTCAAG

upper sequence: GLYMA19G14930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0065g00710.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtgttcttgttgagtgctttggttggttgttattggaagaaatgtgt--gattttgattgtgtttcgtgattgaaatcatgttgcttcttctgctatgggtctgattttttgttggtgcttgttcgtgtttagGCCAAGTTTTGGAGGCAATATGTGGAGGCACATATGGCTGCAAATAATGATGATGCTACAAAACAGATTTTTAGTCGGTGCTTGTTGAATTGTCTTCAGA
                    | ||     |    |   ||||||| |   |   ||||    |   |||  ||  |  | | |||| || |     ||  ||  |||   |  || ||               | |||| |||| ||||||||||||| ||||||| || ||||||| |||||||||||| ||||||||||| || ||||| ||||| |||||||||||  |||| |
--------------------ccttatcccgac-ctgggggaagaagttcttcaaatttctgctaatttttttggct--atttatgtagcatacatggc--tgaatctatctactttttaaa------------tcagGCAAAGTATTGGAGGCAATATTTGGAGGCCCAAATGGCTGTAAATAATGATGAAGCTACAAAACAAATATTTAGCCGGTGTTTGTTGAATTGCTTTCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgcttcttctgctatgggtctgattttttgttggtgcttgttcgtgtttagGCCAAGTTTTGGAGGCAATATGTGGAGGCACATATGGCTGCAAATAATGATGATGCTACAAAACAGATTTTTAGTCGGTGCTTGTTGAATTGTCTTCAGA
                     gtctgat  putative branch site (score: 4)
                                        cttgttc  putative PPT
                          attttttgtt  TA-rich tract