Sequence
atgc intronic sequence ATGC exonic sequence...taacttcttttattgataatgttaaagggtttgtgcagttcattttgatgcttgtttgatagattttcttgcaaaaaatgtgacatctgtttcactacagTTCATTCGTTTTCTAAGAAGAACTGAAGGTGTTGAAGCTGCTAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTG
Basic information
species | Glycine max |
transcript | GLYMA19G14930.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G14930.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os12g38380.1 (Oryza sativa), 3'ss of exon 13
-taacttcttttattgataatgttaaagggtttgtgcagttcattttgatgcttgtttgatagattttcttgcaaaaaatgtgacatctgtttcactacagTTCATTCGTTTTCTAAGAAGAACTGAAGGTGTTGAAGCTGCTAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTG
| | || | ||| || | | || | | || | || | | ||| || ||| | | | || | || | |||| ||||| |||||||| ||||||||||| ||||||| ||| | |||||||||||||||||||| || | ||| |||| || |||||||| |||||||
gtgagttgctaacttgttattacttttggcatacttagattattgctgtaatgtatgtgagagcttt-------agcattctgg----ttttctgttgtagTTTATTCGATTTCTAAGGAGAACTGAAGGCATTGAAGCAGCTCGTAAGTACTTTCTGGATGCTCGGAAATTGCCAGGCTGCACTTATCATGTCTATGTTG
upper sequence: GLYMA19G14930.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G445766_T01 (Zea mays), 3'ss of exon 2
taacttcttttattgataatgttaaagggtttgtgcagttcattttgatgc-ttgtttgatagattttcttgcaaaaaatgtgacatctgtttc--actacagTTCATTCGTTTTCTAAGAAGAACTGAAGGTGTTGAAGCTGCTAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTG
| | | | | || | | || || ||| | || | ||| | |||| | || ||||| ||| |||| ||||| |||||||| ||||||||||| |||||| || | ||||||||| |||||||||| ||||| |||||||| || |||||| | |||||||
---------------------gtgagctgccattacttttgacgtaaatatattcttttgttgagtgctttgtgacaaatttcactgtggtttcctactgtagTTTATTCGATTTCTAAGGAGAACTGAAGGCACTGAAGCAGCCCGTAAGTACTTTTTGGATGCTCGGAAGTCACCAAGCTGCACTTATCATTTGTATGTTG
upper sequence: GLYMA19G14930.1 (Glycine max), 3'ss of exon 14
lower sequence: AT1G17760.1 (Arabidopsis thaliana), 3'ss of exon 12
----------------------------------------------taacttcttttattgataatgttaaagggtttgtgcagttcattttgatgcttgtttgatagattttcttgcaaaaaatgtgacatctgtttcactacagTTCATTCGTTTTCTAAGAAGAACTGAAGGTGTTGAAGCTGCTAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTG
||| | | | | | ||| |||| | | || || | ||||| || | | | | | | || | || |||| | |||||||||| | || |||| ||||||||||||||| | ||||||||| | |||||| | || || || ||||| ||||||||||| ||| |||
gtaagtacgctcaagtttcaaaatttaggacttgcgaagattggcataaacagcatatctttcactttgaaattgtttcttttctctgaaaacattctcatatgatatatacttatatatata----tatatatattctttcgcagTACCTTCGTTTTCTCCGGAGGGCTGAGGGTGTTGAAGCTGCTCGCAAGTACTTTTTAGATGCTAGAAAATCTCCTAGCTGCACATATCATGTGTATATTG
upper sequence: GLYMA19G14930.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv11s0065g00710.t01 (Vitis vinifera), 3'ss of exon 13
-taacttcttttattgataatgttaaagggtttgtgcagt-tcattttgatgcttgtttgatagattttcttgcaaaaaatgtgacatctgtttcactacagTTCATTCGTTTTCTAAGAAGAACTGAAGGTGTTGAAGCTGCTAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTG
| | |||| | | ||||| | || | |||| || |||||| | | || ||| || | | | | | ||||||||||||||||||||||||||||| || |||||||| ||| | ||||| ||| | |||||||| || ||||||| ||| || || ||||| | |||||
ttcccaatttttggcttttacagaaaaggcctcatgtggcctcatgtt--tgcttgcaactttaaactttttgtaactcgtttactgtgtttaatgtggcagTTCATTCGTTTTCTAAGAAGAACTGAGGGAGTTGAAGCAGCTCGCAAGTATTTTTTAGATGCTCGTAAATCCCCAAACTGCACGTACCATGTGTTTGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatgcttgtttgatagattttcttgcaaaaaatgtgacatctgtttcactacagTTCATTCGTTTTCTAAGAAGAACTGAAGGTGTTGAAGCTGCTAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTG
tctgtttc CT-rich tract
atagatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taacttcttttattgataatgttaaagggtttgtgcagttcattttgatgcttgtttgatagattttcttgcaaaaaatgtgacatctgtttcactacagTTCATTCGTTTTCTAAGAAGAACTGAAGGTGTTGAAGCTGCTAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctgt