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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTGCTTATGCTACAATGGCATTTTGTCTTGACAAGGATCCAAAGgttcctattatttcctctttttgtgtgtgtgtgtatgtatgtgtattttagtcaggtagtgggattatttatttctataaaatcatatgttttttgataa...

Basic information

species Glycine max
transcript GLYMA19G14930.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G14930.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os12g38380.1 (Oryza sativa), 5'ss of exon 14
TAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTGCTTATGCTACAATGGCATTTTGTCTTGACAAGGATCCAAAGgttccta------ttatttcc-tctttttgtgtgtgtgtg-tatgtatgtgtattttagtcaggtagtgggattatttatttctataaaatcatatgtt----ttttgataa--
| | |||||||||||||||||||| || |  ||| |||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||   |      |||| |   | |||||   | |      |    |  ||  ||||||     |  |  | || | | |||  || |  |||| || |    || || |    
TCGTAAGTACTTTCTGGATGCTCGGAAATTGCCAGGCTGCACTTATCATGTCTATGTTGCTTACGCTACAATGGCATTTTGCCTTGACAAGGATGCAAAGgttgtgaaaggaattatcttgatgttttttaatataaaaaatgcaaacatggtttttaggttatttatctgtttttatttttgcattagttcatctgctacaattctgttccag

upper sequence: GLYMA19G14930.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G445766_T01 (Zea mays), 5'ss of exon 3
TAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTGCTTATGCTACAATGGCATTTTGTCTTGACAAGGATCCAAAGgttcctattatt-tcctctttttgtgtgtgtgtgta-tgtatgtgtattttagt----caggtagtgggattatttatttctataaaatcatatgttttttgataa
  | ||||||||| |||||||||| ||||| |||||||| || |||||| | |||||||||||||||||||||||||| ||  ||||||||||| ||||||||   |  ||  |    | |||| || | | | |  | | |     |   | |        |||||     | |||    || | ||  || |||   ||     
CCGTAAGTACTTTTTGGATGCTCGGAAGTCACCAAGCTGCACTTATCATTTGTATGTTGCTTATGCTACAATGGCATTCTGCGTTGACAAGGATGCAAAGgttgtgaaaatggtgacatctttgcgtttttttctcctttttacaggtcccaatatttttaatagtgaagacaattaaaaataaataaa-atgtgtcagtt-----

upper sequence: GLYMA19G14930.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G17760.1 (Arabidopsis thaliana), 5'ss of exon 13
TAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTGCTTATGCTACAATGGCATTTTGTCTTGACAAGGATCCAAAGgttcctattatttcctctttttgtgtg---tgtgtg-tatgtatgtgtattttagtcaggtagtgggattatttat--ttctataaaatcatatgttttttgataa
| | ||||||||| | |||||| | || || || ||||| ||||||||||| ||| |||||| |||||| ||||| |||||| |||||||||| ||||||||   | || || ||   | |   |||   | | || ||| ||    |  ||| |||  ||   ||   || |  |  |||  | || |                 
TCGCAAGTACTTTTTAGATGCTAGAAAATCTCCTAGCTGCACATATCATGTGTATATTGCTTTTGCTACCATGGCCTTTTGTATTGACAAGGAACCAAAGgtgtattttcttacccactatgtggtggtctatatgctatttagaactgcttttgtcttgtgaaggaggtagtggtcgttcagtcaagttcagaacccac------

upper sequence: GLYMA19G14930.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv11s0065g00710.t01 (Vitis vinifera), 5'ss of exon 14
TAGGAAGTACTTTCTGGATGCTCGCAAGTCCCCAAGCTGTACATATCATGTTTATGTTGCTTATGCTACAATGGCATTTTGTCTTGACAAGGATCCAAAGgttcctat--tatttcctctttttgtgtgtgtgtgtatgta----tgtgtattttagtcaggtagtgggattatttatttctataaaatcatatgttttttgataa
| | ||||| ||| | |||||||| || ||||||| ||| || || ||||| | |||||| ||||| |  ||||| ||||||||||||||||||||||||||  ||||   |     |  |||  ||      || |  |     | | |||| ||   |   | ||| |  ||  |   | |     ||||   ||  |      
TCGCAAGTATTTTTTAGATGCTCGTAAATCCCCAAACTGCACGTACCATGTGTTTGTTGCATATGCCATGATGGCTTTTTGTCTTGACAAGGATCCAAAGgtaactatgtcacagttttgtttcatgatcagttggagatggtattatatattatataaaatgaatggaaaaatgaaaggccaggtcttcatgctttact------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193552596|gb|FK506917.1|FK506917
EST:     TTTATGTTGCTTATGCTACAATGGCATTTTGTCTTGACAAGGATCCAAAG                         ATGGCTCATAANGTTTTTGAAGCAGGACTAAAACGCTTTATGCACGAGCCT
genomic: TTTATGTTGCTTATGCTACAATGGCATTTTGTCTTGACAAGGATCCAAAGgttcctatta ... atccatgcagATGGCTCATAATGTTTTTGAAGCAGGACTAAAACGCTTTATGCACGAGCCT