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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaactattacttcatgtgtaatgatattgctacatgttggatttgtttgctgacaaaaatgattgttgcctcattgatgtagGAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTGATATGAAGATAAAGATGGAGGGTTTCTTGAAAATTTGGAACTGGGTGAA

Basic information

species Glycine max
transcript GLYMA19G13280.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337063|gb|CO980929.1|CO980929
EST:     CAACAAACAACTGAAGAGGAAGTCCACAATTAGACACGATCAAAGCCCTG                         GAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTG
genomic: CAACAAACAACTGAAGAGGAAGTCCACAATTAGACACGATCAAAGCCCTGgtagaaacta ... attgatgtagGAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTG
EST: gi|151398403|gb|EV268274.1|EV268274
EST:     CAACAAACAACTGAAGAGGAAGTCCACAATTAGACACGATCAAAGCCCTG                         GAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTG
genomic: CAACAAACAACTGAAGAGGAAGTCCACAATTAGACACGATCAAAGCCCTGgtagaaacta ... attgatgtagGAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTG
EST: gi|20813741|gb|BQ298219.1|BQ298219
EST:     CAACAAACAACTGAAGAGGAAGTCCACAATTAGACACGATCAAAGCCCTG                         GAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTG
genomic: CAACAAACAACTGAAGAGGAAGTCCACAATTAGACACGATCAAAGCCCTGgtagaaacta ... attgatgtagGAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctacatgttggatttgtttgctgacaaaaatgattgttgcctcattgatgtagGAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTGATATGAAGATAAAGATGGAGGGTTTCTTGAAAATTTGGAACTGGGTGAA
                                         cctcatt  CT-rich tract
                           aaaaatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagaaactattacttcatgtgtaatgatattgctacatgttggatttgtttgctgacaaaaatgattgttgcctcattgatgtagGAGGGACTTTTGAGGAAAGCCCTGCTCAAGCTGAAGCTCAAGCTCGTGCTGATATGAAGATAAAGATGGAGGGTTTCTTGAAAATTTGGAACTGGGTGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG