Sequence
atgc intronic sequence ATGC exonic sequenceTGATTTGCTTGGAGTTTCTGTTGATTCAAATGCCCATGAAATCAAAGAAGCTTACCGGAAGCTGCAAAAGAAGTATCATCCGGATATTTTTGGCCAAAAGgtaactcctctgatttttcatagtttttgtaattcaatgacagaaaaatttaggttttaatagtaatttttcagtatttttttgtctagtgtgattcatgaatgaacttttatggtag
Basic information
species | Glycine max |
transcript | GLYMA19G13280.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G13280.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0177g00270.t01 (Vitis vinifera), 5'ss of exon 5
TGATTTGCTTGGAGTTTCTGTTGATTCAAATGCCCATGAAATCAAAGAAGCTTACCGGAAGCTGCAAAAGAAGTATCATCCGGATATTTTTGGCCAAAAGgtaactcctct-----------------gatttttcatagtttttgtaattc-aatgacagaaaaatttaggt---tttaatagtaatttttcagtatttttttgtctagtgtga-ttcatgaatgaacttttatggtag-------------------------------------------------------------
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TGAGTTGCTTGGAGATTCTGTTGACTCAAATACTCAGCAGATCAAAGAAGCTTACAGGAAGCTTCAAAAGAAATATCACCCAGATGTTGCAGGCGAAAAGgtcagttcttttttcaagttagaaattcaatttcttcttctttatgggattttgaagattcatagattgaagcccatttgatc-tatggtttatggaggtgatcccctactgtgaattcactatttccattttattagactcaataatactgtagatcactgcaaatttgatgttgaagaatttccctatatttgttatag
upper sequence: GLYMA19G13280.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0177g00280.t01 (Vitis vinifera), 5'ss of exon 2
TGATTTGCTTGGAGTTTCTGTTGATTCAAATGCCCATGAAATCAAAGAAGCTTACCGGAAGCTGCAAAAGAAGTATCATCCGGATATTTTTGGCCAAAAGgtaactcctct------------gatttttcatagtttttgtaattcaatgacagaaaaatttaggttttaat--agtaatttttcagtatttttttgtctagtgtgattcatgaatg-aacttttatggtag------------------------
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TGAGTTGCTTGGAGTTTCTGTTGATTCAAATCCCCAGGAGATCAAAGAAGCTTACAGGAAGCTTCAAAAGAAATATCACCCAGATGTTGCAGGCCAAAAGgtcatttcttttttcgagttagaaattcaacttctttttctttatggggttttgaagattcatagatttaagtccatttcatttccaccatttgactcgatagtactgtaaatcactgcaaatttgatgttgaagaatttccctatatttgttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120532698|gb|EH260831.1|EH260831EST: CTTACCGGAAGCTGCAAAAGAAGTATCATCCGGATATTTTTGGCCAAAAG GGCCATGAGTATACTCTGATGCTAAATAAGGCTTATGAAGTGCTGATGACA
genomic: CTTACCGGAAGCTGCAAAAGAAGTATCATCCGGATATTTTTGGCCAAAAGgtaactcctc ... tttatggtagGGCCATGAGTATACTCTGATGCTAAATAAGGCTTATGAAGTGCTGATGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATTTGCTTGGAGTTTCTGTTGATTCAAATGCCCATGAAATCAAAGAAGCTTACCGGAAGCTGCAAAAGAAGTATCATCCGGATATTTTTGGCCAAAAGgtaactcctctgatttttcatagtttttgtaattcaatgacagaaaaatttaggttttaatagtaatttttcagtatttttttgtctagtgtgattcatgaatgaacttttatggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT