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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtgcacttcacaatgactatgtaatgaatgtggatctacttcaataagctactatgttgtagttgtaggagtatgagtgtatgacacaagaaaatctcagGTTTCTGTTGAGTCATGTCCAGTCAATTGCATACATTGGGTGGAGACAGAAGAATTGCCAGTGCTTGAGTTCCTGATCCAGCCTCAGCCGAAAGACGGGT

Basic information

species Glycine max
transcript GLYMA19G13280.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G13280.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0177g00280.t01 (Vitis vinifera), 3'ss of exon 4
gtatagtgcacttcacaat-gactatgtaatgaa---tgtggatctacttcaataagctactatgttgtagttgtaggagtatgagtgtatgacacaagaaaatctcagGTTTCTGTTGAGTCATGTCCAGTCAATTGCATACATTGGGTGGAGACAGAAGAATTGCCAGTGCTTGAGTTCCTGATCCAGCCTCAGCCGAAAGACGGGT
   ||   |||||  |||| | | ||  ||   |   | ||||  |     ||||||  | | |  |  |  |  |  |   ||  ||  ||||    ||   |  |||||||| ||||| ||||| ||||| || ||||| || |||||||| |  ||||| ||| || | |||||||||||||| |||||||| || || || || |
--gtatcacacttgccaataggccattgaacagagcgtttggacattggataataaggcaat-tagtacatgtaaactaacctgc-tgggtgacttgggatc-ttgcagGTTTCGGTTGATTCATGCCCAGTAAACTGCATTCACTGGGTGGATAGGGAAGAGTTGGCAATACTTGAGTTCCTGATTCAGCCTCAACCCAAGGAAGGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337063|gb|CO980929.1|CO980929
EST:     GAAGTGCACGGGTTAAAGTTCAATATGGAGACAATGACCAAAGTATTGAG                         GTTTCTGTTGAGTCATGTCCAGTCAATTGCATACATTGGGTGGAGACAGAA
genomic: GAAGTGCACGGGTTAAAGTTCAATATGGAGACAATGACCAAAGTATTGAGgtatagtgca ... aaaatctcagGTTTCTGTTGAGTCATGTCCAGTCAATTGCATACATTGGGTGGAGACAGAA
EST: gi|151398403|gb|EV268274.1|EV268274
EST:     GAAGTGCACGGGTTAAAGTTCAATATGGAGACAATGACCAAAGTATTGAG                         GTTTCTGTTGAGTCATGTCCAGTCAATTGCATACATTGGGTGGAGACAGAA
genomic: GAAGTGCACGGGTTAAAGTTCAATATGGAGACAATGACCAAAGTATTGAGgtatagtgca ... aaaatctcagGTTTCTGTTGAGTCATGTCCAGTCAATTGCATACATTGGGTGGAGACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagctactatgttgtagttgtaggagtatgagtgtatgacacaagaaaatctcagGTTTCTGTTGAGTCATGTCCAGTCAATTGCATACATTGGGTGGAGACAGAAGAATTGCCAGTGCTTGAGTTCCTGATCCAGCCTCAGCCGAAAGACGGGT
                                          aagaaaat  TA-rich tract