Sequence
atgc intronic sequence ATGC exonic sequencegtgtactgcttattgcagtgaataatgtgatttcatttagcttttgttatttaatattagcagtgtatggtcatcattactgattcagcttactcttgtgcgtagGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGAGATTATAATAATTTTTTCCTTTTTTGGT
Basic information
species | Glycine max |
transcript | GLYMA19G08930.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G08930.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0066g00390.t01 (Vitis vinifera), 3'ss of exon 7
----------------gtgtactgcttattgcagtgaataatgtgatttcatttagcttttgttatttaatattagcagtgtat---ggtcatcattactgattcagcttactcttgtgcgtagGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGAGATTATAATAATTTTTTCCTTTTTTGGT
||| ||||| | || || || | | | ||| | || ||| || | | | || | || || | | | | || | | | |||| || |||| || ||| ||||||||||| |||||| ||| |||||||||||||||||||| | ||| | | | || | | || || ||
gtaccatagcttagttttgttttgcttcctagagagagta-tatagtcctgttttttgtatgaaattccattctctctgctcattaggaaaattatctcctcattaacagcctttactttgcagGAGAAGCAAAACTCCAAGGTAAAGGAAATTGATTGGCCAGAGCTGAAACCTTGTTTGTACAAGCGCCGTTGACCTCACACCAAACTACTTCTGTTATGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6952161|gb|AW424229.1|AW424229EST: GACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAG GAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCT
genomic: GACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAGgtgtactgct ... ttgtgcgtagGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaatattagcagtgtatggtcatcattactgattcagcttactcttgtgcgtagGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGAGATTATAATAATTTTTTCCTTTTTTGGT
cttactctt CT-rich tract
atcatta TA-rich tract