1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcatcccataaggaagaacagtcttaaagctttttattttaacatttcatggttatattacttacaagtgtacatactcctgctgtgaattattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCA
species | Glycine max |
transcript | GLYMA19G08930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAAT ACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGEST: gi|9820197|gb|BE555707.1|BE555707
genomic: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATgtatgttttc ... ttattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTG
EST: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAAT ACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGEST: gi|151406301|gb|EV276116.1|EV276116
genomic: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATgtatgttttc ... ttattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTG
EST: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGGAAAT ACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGEST: gi|192327181|gb|FK015573.1|FK015573
genomic: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATgtatgttttc ... ttattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTG
EST: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAAT ACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGEST: gi|254349200|gb|GR859945.1|GR859945
genomic: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATgtatgttttc ... ttattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTG
EST: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAAT ACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGEST: gi|51343885|gb|CO984618.1|CO984618
genomic: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATgtatgttttc ... ttattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTG
EST: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAAT ACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTG
genomic: TAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATgtatgttttc ... ttattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTG
tttcatggttatattacttacaagtgtacatactcctgctgtgaattattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCA
tacttac putative branch site (score: 1)
ttatattacttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatcccataaggaagaacagtcttaaagctttttattttaacatttcatggttatattacttacaagtgtacatactcctgctgtgaattattggcagACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
-gcatccc
- - - - - - -gaagaac
- - - - - - - - - - - - - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgtac