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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggatttgttcatttcgttaccacaacaaataaacatggaattaggttgtgctaactgatatctattccgtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAG

Basic information

species Glycine max
transcript GLYMA19G08930.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08930.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0066g00390.t01 (Vitis vinifera), 3'ss of exon 6
gtgtggatttgttcatttcgttaccacaacaaataaacatggaattaggttgtgctaactgatatctattccgtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAG
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gtttattcatgttcctcttgt--cttctagaaataaattaatcctttcttcatgctaattgatacttactatgtgcagGACTTTTCAAATAAAATGTTTATCTTGTTATACTTCAAGAAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6952161|gb|AW424229.1|AW424229
EST:     AAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAG                         GACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAG
genomic: AAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGgtgtggattt ... ttccgtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacaacaaataaacatggaattaggttgtgctaactgatatctattccgtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAG
                                         tctattcc  CT-rich tract
       aaataaacat  TA-rich tract