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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGgtgagaagttactctgatcttattgttaattataacttttacctgatagccaagttctttttgctcattgctactgctttcatgtttccattttag

Basic information

species Glycine max
transcript GLYMA19G08930.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057623|gb|CA800537.1|CA800537
EST:     GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTG                         GGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
genomic: GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGgtgagaagtt ... tccattttagGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
EST: gi|9820197|gb|BE555707.1|BE555707
EST:     TGGCTGNNNNNNNCAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTG                         GGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
genomic: TGGCTG-AAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGgtgagaagtt ... tccattttagGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
EST: gi|151406301|gb|EV276116.1|EV276116
EST:     GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTG                         GGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
genomic: GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGgtgagaagtt ... tccattttagGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
EST: gi|298197544|gb|HO045023.1|HO045023
EST:     GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTG                         GGGAAGCACTC
genomic: GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGgtgagaagtt ... tccattttagGGGAAGCACTC
EST: gi|192327181|gb|FK015573.1|FK015573
EST:     GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTG                         GGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
genomic: GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGgtgagaagtt ... tccattttagGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
EST: gi|254349200|gb|GR859945.1|GR859945
EST:     GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTG                         GGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
genomic: GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGgtgagaagtt ... tccattttagGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
EST: gi|51343885|gb|CO984618.1|CO984618
EST:     GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTG                         GGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC
genomic: GTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGgtgagaagtt ... tccattttagGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATC