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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACAGGAAGCTATATTGACCATCCCTCGTGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAGgtacaaaacttcaaactctataattttggactcatagcaaccttattaaatttaattgttgtgtcttatgtatacactaaatatacacagttaaacttgg...

Basic information

species Glycine max
transcript GLYMA19G08920.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08920.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G27530.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTACAGGAAGCTATATTGACCATCCCTCGTGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAGgtacaaaact--tcaa--actctataattttggact---catagcaaccttattaaatttaattgttgtgtcttatgtatacactaaatat---------acacagttaaacttgg--------------------------------------------------
||| ||||||||||| |||||||  ||||| ||||| |||||||| ||||| ||||| |||||| | |||||| | || |  | |   | |  |||  | ||  ||   ||| |    | ||  |   | |  | ||    ||  |||  ||   |||||          | || || ||   |||                                                  
GTTGCAGGAAGCTATTTTGACCACTCCTCGCGGTATTACTCGGCTCATGGATATGCTAATGGATAGAGAGgtaaataattaattatttattggatatgtatgatctttccattgtttacgtaagactctgacctctttaacctcctgtcaacctcaaataggaggttatgagacggtaaactctggaagggaacaatatcatgtttgtaattttttttttggtgtatgccttatag

upper sequence: GLYMA19G08920.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0139g00160.t01 (Vitis vinifera), 5'ss of exon 7
GTTACAGGAAGCTATATTGACCATCCCTCGTGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAGgtacaaaactt-caaactctataattttggactcatagcaaccttattaaatttaattgttgtgtcttat-gtatacactaaatat-acacagttaaacttgg
|||||||||||| ||  |||| || |||||||| || |||||||| ||||| ||||||||||||||||||||   || ||    |||   |  ||  |  || | |  |    |||| |    || || ||     | || |      ||| | || |||   | |||     
GTTACAGGAAGCAATTCTGACTATTCCTCGTGGGATCACTCGGCTTATGGATATGCTTATGGATCGTGAGgtgtgaagctggttaaccaaaccatactttacccttttct-tattataattgctactttttaaagttaattgggctttctagaaattacaatatcaaatca--