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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagttttattggcttccattttttatttaaagcacataactattaaaccatctagcttggaaagcacacttgctaagttcctcttcagGTTACAGGAAGCTATATTGACCATCCCTCGTGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAG

Basic information

species Glycine max
transcript GLYMA19G08920.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08920.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G27530.1 (Arabidopsis thaliana), 3'ss of exon 7
gtattagttttattggcttccattttttatttaaagcacataactattaaaccatctagcttggaaagcacacttgctaagttcctcttcagGTTACAGGAAGCTATATTGACCATCCCTCGTGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAG
||||   | |||     | | || | |             | | | ||  | | | ||   |  | || ||  ||||| | |  ||||||||||| ||||||||||| |||||||  ||||| ||||| |||||||| ||||| ||||| |||||| | |||
gtatgtatcttaggatgtactatctct----------gtgtcatttttctatc-tgtatgctatagag-actgttgctgactgtctcttcagGTTGCAGGAAGCTATTTTGACCACTCCTCGCGGTATTACTCGGCTCATGGATATGCTAATGGATAGAGAG

upper sequence: GLYMA19G08920.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0139g00160.t01 (Vitis vinifera), 3'ss of exon 6
gtattagttttattgg--cttccattttttatttaaagcacataactattaaaccatctagcttggaaagcacacttgctaagttcctcttcagGTTACAGGAAGCTATATTGACCATCCCTCGTGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAG
|||||  ||     |   |||     | || |          ||  |  | |    | |   |||||||  |  | | || | |||   ||||||||||||||||| ||  |||| || |||||||| || |||||||| ||||| ||||||||||||||||||
gtattttttcctcagatactttttgctcttgtacttgaactttaggttatcatttttttcttttggaaaagaatcgtcctgaattctggttcagGTTACAGGAAGCAATTCTGACTATTCCTCGTGGGATCACTCGGCTTATGGATATGCTTATGGATCGTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acataactattaaaccatctagcttggaaagcacacttgctaagttcctcttcagGTTACAGGAAGCTATATTGACCATCCCTCGTGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAG
 acataac  putative branch site (score: 3)
                                            ttcctcttc  putative PPT
     actattaaa  TA-rich tract