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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttgctgttgatgctttaatcactgcacatatttctaatttgttgctaatgttagattttatatgacaattccttgttcatgcacatgccctaaattatcattttttttttctttttctgatgctatcttcaatcaattttaagattgtaaattatttctctttcagCATGCTATTACATGGTCTTACTTTGGGTGAAAATGATGGTGATCTTGAG

Basic information

species Glycine max
transcript GLYMA19G08920.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08920.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv13s0139g00160.t01 (Vitis vinifera), 3'ss of exon 15
gtttgttttgctgttgatgctttaatcactgca--catatttcta---atttgttgctaatgttagattttatatgacaattccttgttcat-gcacatgccctaaattatcatttt---ttttttctttttctgatgctatcttcaatcaattttaagattgtaaattatttctctttcagCATGCTATTACATGGTCTTACTTTGGGTGAAAATGATGGTGATCTTGAG
||||||    || || |||  || |  ||||||    || |||||    |   |    |   ||  || ||  ||||    ||  | |  || |||   |    || |||||  |||   ||||||| | ||     ||||  ||  |  |||  |       ||  || || || |  ||||||||| |||| ||||||||| |||  ||||||||||||||||||||||
gtttgtgg-actcttaatgtattcaatactgcaattttacttctataagtgcatcttgagattttaatatttcatgatgtatcaatttctattgcattagtttaaacttatccgtttccattttttcatctttactagctacttttgaggaataatctttcaatactttgttcctatggcagCATGCTTTTACGTGGTCTTACGTTGAATGAAAATGATGGTGATCTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctgatgctatcttcaatcaattttaagattgtaaattatttctctttcagCATGCTATTACATGGTCTTACTTTGGGTGAAAATGATGGTGATCTTGAG
   ttctgat  putative branch site (score: 3)
                                        ttatttctctttc  putative PPT
            tatcttcaatcaattt  TA-rich tract