Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTATTACATGGTCTTACTTTGGGTGAAAATGATGGTGATCTTGAGgtttgtgatgcttgttttatattcattccatttattttgatttttccgtgttaatgccagctgaagtgttggcagcatggctaatgaacttcggcctttgatctttgtaccacaatggaagtcaatattttcttgattggttaattattgtgtgagaactatctggttaacattttgttgaaaatgtag

Basic information

species Glycine max
transcript GLYMA19G08920.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08920.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv13s0139g00160.t01 (Vitis vinifera), 5'ss of exon 16
CATGCTATTACATGGTCTTACTTTGGGTGAAAATGATGGTGATCTTGAGgtttgtgatgcttgttttatattcattccatttattttgatttttccgtgttaatgccagctgaagtgttggcagcatggctaatgaacttcggcctttgatctttgtaccacaatggaagtcaatattttcttgattggttaattattgtgtgagaactatctggttaacattttgttgaaaatgtag
|||||| |||| ||||||||| |||  ||||||||||||||||||||||||     ||   | | ||| | | |  ||||                 |      ||  ||  || | ||  |  |     |  |  | || || | |||  ||||    || || || |  | ||                                                               
CATGCTTTTACGTGGTCTTACGTTGAATGAAAATGATGGTGATCTTGAGgt--aacataact-tcttaaagtaagcccatac---------------taaaggagcatgcacaaattttctcccc----tttttccatttaggacattgtccttt----cataaggggatactat---------------------------------------------------------------