Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgtgcttttggaactggaccctttgtgttttcttcttcttcaactgttctgtttgccactatgctatggttgttaactctcgaaagtgtttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAA

Basic information

species Glycine max
transcript GLYMA19G08050.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08050.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G27460.1 (Arabidopsis thaliana), 3'ss of exon 8
actgtgcttttggaactggaccctttgtgttttcttcttcttcaactgttctgtttgccact-----atgctatggttgttaactctcgaaagt---gtttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAA
             |  |   ||     | | ||| | |  || |||  ||||  ||   | |     || | |  ||  |||||| |  | | |   | ||  |  || ||| || | ||||||||||||||||| ||||| ||| | ||||| ||||| |||||||| ||||||||||||||  || | |||||||| |||||||| 
----------gtaagttcctccacacctttgttcatatagttaaacatttctagttaagatttaagaatcccaaagtgtttaactatgaacatttctgattatattagGTACTTGCTAGAATTTGATGATGATGAAGAAGACGGAGCATTACCTCAAAGAACAGTGCCATTCCACAAAGTGGTAGCTTTACCAGAAGGCCATCGCCAG

upper sequence: GLYMA19G08050.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G40550.2 (Arabidopsis thaliana), 3'ss of exon 8
actgtgcttttggaactggaccctttgtgttttcttctt-cttcaactgttctgtttgccactatgctatggttgttaactctcgaaagtgtttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAA
   ||   || |    |  ||| ||| ||||| |||  | ||  || ||   | ||| |  ||||   ||   |   ||  ||   |  ||| || |  || ||  || | ||||| || |||||||||||||||||| | || || ||||| ||||| || ||||||||||||||  || | |||||||| |||||||| 
---gtaagttcg----tcaaccttttatgtttgctttatactgaaaatggggtcttttcatctatatcata--taacaagact---atttgtctg-attagGTATTTGCTTGAATTCGACGATGATGAGGAAGATGGAGCATTGCCTCAAAGAACAGTACCTTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAG

upper sequence: GLYMA19G08050.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0066g00210.t01 (Vitis vinifera), 3'ss of exon 9
actgtgcttttggaactggaccctt-tgtgttttcttcttc---ttcaactgttctgtttgccactatgctatggttgttaactctcgaaagtgtttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAA
 || |  || || ||| | | | |   |   |||   |||    |||||    |     ||    | || | |  |    |  | |      || || |  |||||| ||  ||||||| ||||| || |||||||||||||||||||| ||||||  ||||||||||||||| |||||| | || || || ||||||||||| 
-ctata-ttctgaaacagaagcttgacgaacttttgactttgatttcaatcactactgctgttggtgtggtgtcatatgcatatgtgtgtgttggtttg--cagTTATGTACTGGAATTCGATGACGACGAGGAAGATGGATCTTTACCCCAAAGGGTAGTGCCCTTCCACAAGGTGGTTGCCCTGCCGGAGGGACATCGCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455745|gb|AW186428.1|AW186428
EST:     GCCATCGCAGAAGGAAGACCGAGGA                         TGACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTGTACCACAAAG
genomic: GCCATCGCAGAAGGAAGACCGAGGAgtaagtatac ... tttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
EST: gi|208073412|gb|GD867329.1|GD867329
EST:     GCCATCGCAGAAGGAAGACCGAGGA                         TTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
genomic: GCCATCGCAGAAGGAAGACCGAGGAgtaagtatac ... tttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
EST: gi|208077221|gb|GD876488.1|GD876488
EST:     GCCATCGCAGAAGGAAGACCGAGGA                         TTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
genomic: GCCATCGCAGAAGGAAGACCGAGGAgtaagtatac ... tttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
EST: gi|208085734|gb|GD880616.1|GD880616
EST:     GCCATCGCAGAAGGAAGACCGAGGA                         TTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
genomic: GCCATCGCAGAAGGAAGACCGAGGAgtaagtatac ... tttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
EST: gi|207838742|gb|GD810432.1|GD810432
EST:     GCCATCGCAGAAGGAAGACCGAGGA                         TTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
genomic: GCCATCGCAGAAGGAAGACCGAGGAgtaagtatac ... tttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
EST: gi|207763908|gb|GD738381.1|GD738381
EST:     GCCATCGCAGAAGGAAGACCGAGGA                         TTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG
genomic: GCCATCGCAGAAGGAAGACCGAGGAgtaagtatac ... tttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttctgtttgccactatgctatggttgttaactctcgaaagtgtttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAA
                           tgttaac  putative branch site (score: 2)
                          ttgttaa  TA-rich tract