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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgacaacactacatgccaaatttccattgatttgttagaggatgttgcatttttttggttgtttaagatttttctctccatccatttttttcttttccagGAAAAG

Basic information

species Glycine max
transcript GLYMA19G08050.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208128999|gb|GD928481.1|GD928481
EST:     TGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAG                         GAAAAG
genomic: TGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAGgtttgtctca ... tcttttccagGAAAAG
EST: gi|6455745|gb|AW186428.1|AW186428
EST:     TGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAG                         G--AA-
genomic: TGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAGgtttgtctca ... tcttttccagGAAAAG
EST: gi|151403633|gb|EV273443.1|EV273443
EST:     TGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAG                         GAAAAG
genomic: TGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAGgtttgtctca ... tcttttccagGAAAAG
EST: gi|207822826|gb|GD793627.1|GD793627
EST:     TGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAG                         GAAAAG
genomic: TGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAGgtttgtctca ... tcttttccagGAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatttttttggttgtttaagatttttctctccatccatttttttcttttccagGAAAAG
                       tttttctctccatcca  CT-rich tract
             ttgtttaagattttt  TA-rich tract