1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCTCGATATTGGATAACTCGAAGGAGCTCGATCGGGTTAGGAAAGAACAGGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttctctctctctttttctattcattgttattattattttttatttttgggttttttcaatgctgcatcttcgtcctgtttgtgatccttcaggt...
species | Glycine max |
transcript | GLYMA19G08050.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGATTATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAA CTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAATEST: gi|151403633|gb|EV273443.1|EV273443
genomic: GAGGA-TATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttct ... tttgatgcagCTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAAT
EST: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAA CTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAATEST: gi|207822826|gb|GD793627.1|GD793627
genomic: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttct ... tttgatgcagCTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAAT
EST: ATATTCTGTCGGAGATCAACAAGCTCCACAAGAAGCTTCAAGCAA CTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAATEST: gi|207760530|gb|GD731417.1|GD731417
genomic: ATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttct ... tttgatgcagCTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAAT
EST: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAA CTCCTGAAGTGGTTGAGAAGCCTGGGGATAAEST: gi|193439189|gb|FK404874.1|FK404874
genomic: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttct ... tttgatgcagCTCCTGAAGTGGTTGAGAAGCCTGGGGATAA
EST: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAA CTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAATEST: gi|193339594|gb|FK302785.1|FK302785
genomic: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttct ... tttgatgcagCTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAAT
EST: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAA CTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAATEST: gi|208110483|gb|GD913101.1|GD913101
genomic: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttct ... tttgatgcagCTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAAT
EST: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAA CTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAAT
genomic: GGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttct ... tttgatgcagCTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCGATATTGGATAACTCGAAGGAGCTCGATCGGGTTAGGAAAGAACAGGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAAgtaagtttctctctctctttttctattcattgttattattattttttatttttgggttttttcaatgctgcatcttcgtcctgtttgtgatccttcaggt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA