1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcatccttatgagaatttaaatgcaatttccagttcttgatattcaaaagtttctatactatttttgcttctcacatgtcccaatttcatgcctaatgcaGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACACAAT
species | Glycine max |
transcript | GLYMA18G47970.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTCTATAACATTTATGGGACACCATTGGACACACCTTTTGATGTTT GTTATGGTTCGGAAAACTCTCCAATGGAGGACTTATCTGAAATATGCCACAEST: gi|16346074|gb|BI971669.1|BI971669
genomic: CTGTTTCTATAACATTTATGGGACATCATTGGACACACCTTTTGATGTTTggtatgtgac ... gcctaatgcaGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACA
EST: CTGTTTCTATAACATTTATGGGACATCATTGGACACACCTTTTGATGTTT GTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACAEST: gi|192296288|gb|FG991570.1|FG991570
genomic: CTGTTTCTATAACATTTATGGGACATCATTGGACACACCTTTTGATGTTTggtatgtgac ... gcctaatgcaGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACA
EST: CTGTTTCTATAACATTTATGGGACATCATTGGACACACCTTTTGATGTTT GTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACA
genomic: CTGTTTCTATAACATTTATGGGACATCATTGGACACACCTTTTGATGTTTggtatgtgac ... gcctaatgcaGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACA
aaaagtttctatactatttttgcttctcacatgtcccaatttcatgcctaatgcaGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACACAAT
ttctcac putative branch site (score: 2)
tttctatactattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatccttatgagaatttaaatgcaatttccagttcttgatattcaaaagtttctatactatttttgcttctcacatgtcccaatttcatgcctaatgcaGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - ccttatg
- - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtcc