1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgatagcaattacttattctatgaatgtatcatgtagtaaaaaatgattatggttgttcattattaatttgtggagttcttctgtctcttcataatacaGGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCGTGGAATATTACGAGATGAAACAGTGTTTCAACATATTCAAAAATGGTTG
species | Glycine max |
transcript | GLYMA18G47970.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTATATTCTTACGTCGATGGAGATGGAACGGTTCCTTCTGAATCTGCCAA GGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCGEST: gi|192296288|gb|FG991570.1|FG991570
genomic: CTATATTCTTACGTCGATGGAGATGGAACGGTTCCTTCTGAATCTGCCAAggtactctct ... tcataatacaGGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCG
EST: CTATATTCTTACGTCGATGGAGATGGAACGGTTCCTTCTGAATCTGCCAA GGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCG
genomic: CTATATTCTTACGTCGATGGAGATGGAACGGTTCCTTCTGAATCTGCCAAggtactctct ... tcataatacaGGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCG
tgattatggttgttcattattaatttgtggagttcttctgtctcttcataatacaGGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCGTGGAATATTACGAGATGAAACAGTGTTTCAACATATTCAAAAATGGTTG
tattaat putative branch site (score: 2)
ttcttctgtctcttca putative PPT
ttgttcattattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatagcaattacttattctatgaatgtatcatgtagtaaaaaatgattatggttgttcattattaatttgtggagttcttctgtctcttcataatacaGGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCGTGGAATATTACGAGATGAAACAGTGTTTCAACATATTCAAAAATGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - -gaatgta
- - - - - - - - - - - - - - - tcatgta
- - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - ggttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggag