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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaattaaccaatcttaaggggttatgcttatagttaatttttttgttttttgtaagcattgtttgtttatttatttggttttcttgtgcttaagtgtttctgttatgttgtgtggcaGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGATTGACATGCTTGTTGGATGTGGTTACAACAAGGGAACCACACTCTTTGGA

Basic information

species Glycine max
transcript GLYMA18G47970.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47970.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os09g33820.2 (Oryza sativa), 3'ss of exon 2
ggtaattaaccaatcttaaggggttatgcttata-gttaatttttttgttttttgtaagcattgtttgtttatttatttggttttcttgtgcttaagtgtttctgttatgttgtgtgg---caGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGATTGACATGCTTGTTGGATGTGGTTACAACAAGGGAACCACACTCTTTGGA-
                         || || ||  ||||| |    |   || |  ||  | |     |  |      |  | ||  ||   ||   | ||||   ||| || |||     ||||||    ||  | | ||| || |   ||||||||| |||||||| |||||||| ||||||||||  ||||| ||||| || ||||||||||| |||||| 
----------------------acaatactgatgtgttaaatcaccttccttcttcaactagtcacactcaaagaccataatgtttctga--tttgatttttcctctatcttctgtaaactcagTTTGTGGAGATTCTCCATCTGTCTATGGTGTATCACTTTCATGATATGATTGATATGCTTGTTGACTGTGGATACAAGAAAGGAACCACACTTTTTGGAT

upper sequence: GLYMA18G47970.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G03310.1 (Arabidopsis thaliana), 3'ss of exon 2
ggtaattaaccaatcttaaggggttatgcttatagttaatttttttgttttttgtaagcat--tgtttgtttatttatttggttttcttgtgcttaagtgtttctgt-tatgttg-tgtggcaGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGATTGACATGCTTGTTGGATGTGGTTACAACAAGGGAACCACACTCTTTGGA-
                       || |  || | ||||   ||  |  ||| | | | | |  |   |    | |||  | |||||| || |  ||  || |  | | ||  ||| | |  ||||||   |||  |   || ||||||||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| || ||||| || ||| | || ||  
-----------------------ttgtttttcttgttagccttacttctttgtttcatcttgctaaatagggagttagctcgttttcatg-gtgtatctgatattatatactttgcttttccagTTTGTAAAGCTTTGTCACTTGACGGAGGTTTATCACTTTCACGATATGATAGAAATGCTGGTTGGATGCGGTTATAAGAAGGGGACTACATTATTCGGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691105|gb|AW759238.1|AW759238
EST:     CCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATG                         GTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGAT
genomic: CCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATGggtaattaac ... ttgtgtggcaGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGAT
EST: gi|298183123|gb|HO028386.1|HO028386
EST:     CCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATG                         GTTTACCAAGTGTATACATTTGACGGAGGAGTATCATTTTCATGACATGAT
genomic: CCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATGggtaattaac ... ttgtgtggcaGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGAT
EST: gi|7284783|gb|AW597208.1|AW597208
EST:     CCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATG                         GTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGAT
genomic: CCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATGggtaattaac ... ttgtgtggcaGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttatttatttggttttcttgtgcttaagtgtttctgttatgttgtgtggcaGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGATTGACATGCTTGTTGGATGTGGTTACAACAAGGGAACCACACTCTTTGGA
     tatttatttggtttt  TA-rich tract