1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agctagaaatttttggggaaataatgtcctatatcaatatattgtgctgctgcttttgtatgttttactttaacattttgatttgtattattatttacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTACATTTAGGGTATATGCAGATTCGCGAGAAGTTAGCTGAACTTCAA
species | Glycine max |
transcript | GLYMA18G47910.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTACCG-G-GCTGCGACATTTGTGGAGCCTTTTT-AGATGTTTATGACAG TGATCGCCCGTTTA-CTGAEST: gi|193446427|gb|FK415800.1|FK415800
genomic: CTAC-GTGTG-TGCGACATTTGTGGAGCATTTTTGAG-TGTTTATGACAGgtaacaactg ... ttatttacagTGATCGCC-GTTTAGCTGA
EST: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAG TGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTACATTTAGGGTATAT
genomic: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGgtaacaactg ... ttatttacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTACATTTAGGGTATAT
gctgctgcttttgtatgttttactttaacattttgatttgtattattatttacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTACATTTAGGGTATATGCAGATTCGCGAGAAGTTAGCTGAACTTCAA
tatgttttactttaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctagaaatttttggggaaataatgtcctatatcaatatattgtgctgctgcttttgtatgttttactttaacattttgatttgtattattatttacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTACATTTAGGGTATATGCAGATTCGCGAGAAGTTAGCTGAACTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - -tttgggg
- - - - - - - - - - - - - - - - - - - - - - - ctgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg