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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttttcttccgttttctcactcctcgttcttcgtttagggcttcattatttttttgattccctttctctctgtctccgtttcag

Basic information

species Glycine max
transcript GLYMA18G47910.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g62640.2 (Oryza sativa), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttttcttccgttttctcactcctcgttcttcgtt-tagggcttcattatttttttgattccctttctctctgtctccgtttcag---------
 ||||||||||| || || ||||  |||||||||||||| ||||||||||| ||||||| ||||| ||| |||||||| ||||| ||||||||| | |||||| | |    ||||    |   || |   |  || ||    |   |||||  | | |||||  || | ||       ||     |    |         
CAACGGCGACGTGCGGGAGGTCAGCCGCAAGTACTACGACCGCGACGTCTGCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttcccccttctcagtatccagtatccactcatctccatgatgcttctctgtgttttttttttctttgtgggaggttaatttggtgggtaagcgct

upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g39300.1 (Oryza sativa), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttttcttccgttttctcactcctcgt-------tcttcgtttagggcttcatt--atttttttgattccctttctctctgtctccgtttcag------------------------
 ||||||||||| || || ||||  |||||||||||||| ||||||||||| ||||||| ||||| ||| |||||||| ||||| || |||||| | || ||    |     | |   | ||   | |||||         |  |   ||   |  || |  ||   |  |||||  ||      || ||    | |                          
CAACGGCGACGTGCGGGAGGTCAGCCGCAAGTACTACGACCGCGACGTCTGCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTGTTCCAGCTCACCgtgcgttccccgtgctactctcgatcccctcgcggcggagccccctcctatatccccactccatccatcggattcggttatcgcgtggctgatgtgcgcctgcgttgttttgtttttttgcag

upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgta---acctttttcttccgttttctc--actcc---tcgttcttcgtttagg--gcttcattatttttttgattccctttctctc----tgtctccgtttcag-----------------------------------
 |||||||| || || || ||||  ||||||||||| |||||||||||||| ||||||||||||| ||| |||||||| ||||| ||||||||| | || |||    || | ||   | | |||| |  | |||    | | | |  | |||   | |  | ||  | |  |  |   ||| || |    |  ||  ||||  |                                   
CAACGGCGATGTACGGGAGGTCAGCCGCAAGTACTATGATCGCGACGTCTGCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcag

upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G069916_T04 (Zea mays), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttttcttccgttttctcactcctcgttcttcgtttagggcttcattatttttttgattccctttctctctgtctccgtttcag-----------
 ||||||||||||   || || |  ||||| |||||||| ||||||||||| ||||||| ||||| |||||||||||| ||||| ||||| ||| | |||||| |||  ||  |||  |  |       | |   || | |||||  || |  ||||       |    || ||| | |     ||| |            
CAACGGCGACGTCGAGGAGGTGAGCCGCAACTACTACGACCGCGACGTCTGCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgtttctcccctgacgtttcgttggaattttggttagg-ttttaccatttcgaaatatgaaattatctatttagttttttgaatatttatctat

upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G118014_T02 (Zea mays), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacct--ttttcttccgttttctcactcctcgttcttcgtttagggcttcattatttt--tttgattccctttctctctgtctccgtttcag------
 ||||||||||||   || || |  ||||| |||||||| ||||||||||| || |||| ||||| ||| || ||||| ||||| ||||||||| | |||||| |||  ||| |  ||   |  |   |    |   ||   |||||  | | || |     |  |||  | ||      ||  |       |       
CAACGGCGACGTCGAGGAGGTGAGCCGCAACTACTACGACCGCGACGTCTGCCGGCTCTTCCTCGCCGGCCTTTGCCCCCACGACCTCTTCCAGCTCACGgtatcctcgtttaccccctgatgtttggtttgtgaattttagttaggtttccgttttgggaataggatatcattatctcatggatgaacggaatgttggg

upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G17440.1 (Arabidopsis thaliana), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttttcttccgttttctc----actc---ctcgttcttcgtttagggcttcattatttttttgat--tccctttctctctgtctccgtttcag-
 |||||||| |||  ||| ||||||||||| |||||||| ||||| || || || || ||||||   ||||||||||||||||| || ||||| || |||||     |||   | | | ||||     || |     | |||||| | |   |||  ||   ||| |   |  |  |||         ||   ||||   
AAACGGCGATGTCACTGAGGTCAATCGCAAATACTACGACCGCGATGTTTGCCGTCTTTACCTCTCTGGTCTCTGCCCTCACGAGCTTTTCCAATTGACGgttcgtatttatattcatcttcttcgatacccaattcctttcttcttcttttgctcaatggctttctcattagtatcttggaaaaaaacttaatttcctc

upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g00800.t01 (Vitis vinifera), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttttcttccgttttctcactcctcgttcttcgtttagggcttcattatttttttgattccctttctctctgtctccgtttcag----------------
 |||||||||||||| || || ||| | ||||||||||| || || || |||||||||| | | ||||| || ||||||||||| ||||||||||| ||||||    | ||||     | ||   ||   | |  |  |||   || ||| |||   ||    |    ||  |    |     || |  |                
AAACGGCGACGTCCGGGAGGTGAATAGGAAGTACTACGACCGAGATGTGTGTCGCCTCTTCTTGGTCGGCCTTTGCCCTCACGAGCTCTTCCAGTTGACGgta---ctgttctgggactatcctccttgccttgatctgtt---ggtttctttagcattggagtctgtttggttctcgagaaagtgtgggaaagtggggggaaaaa

upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ22509 (Selaginella moellendorffii), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttttcttccgttttct-cactcctcgttctt-cgtttagggcttcattatttttttgattccctttctctctgtctccgtttcag
 |||||||| ||||  |||||  | ||||||| || |||||| || ||||||||||||||||| |  || ||||| |||||||| ||||||||| | ||||||| | |    |    |   |  | ||    ||| || | | | |   | ||                                       
CAACGGCGATGTCCAGGAAGTGCAGCGCAAGTTCTCCGATCGGGATGTCTGTCGCCTCTACCTTGCTGGCCTCTGTCCTCACGATCTCTTCCAGCTCACGgtaatcatcgattagaatccacagcgctagatgttattgcatctggttttccacag------------------------------------

upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ11722 (Selaginella moellendorffii), 5'ss of exon 1
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttttcttccgttttct-cactcctcgttctt-cgtttagggcttcattatttttttgattccctttctctctgtctccgtttcag
 |||||||| ||||  |||||  | ||||||| || |||||| || ||||||||||||||||| |  || ||||| |||||||| ||||||||| | ||||||| | |         |   |  | ||    ||| || | | | |   | ||                                       
CAACGGCGATGTCCAGGAAGTGCAGCGCAAGTTCTCCGATCGGGATGTCTGTCGCCTCTACCTTGCTGGCCTCTGTCCTCACGATCTCTTCCAGCTCACGgtaatcatcgatcagaatccacagcgctagatgttattgcatctggttttccacag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296271|gb|FG989063.1|FG989063
EST:     GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG                         AAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: gi|193555503|gb|FK515948.1|FK515948
EST:     GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG                         GAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: gi|209725035|gb|BW659770.1|BW659770
EST:     GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG                         AAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: gi|193492617|gb|FK455741.1|FK455741
EST:     GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG                         AAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: gi|193649862|gb|FK595459.1|FK595459
EST:     GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG                         GAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: gi|208276609|gb|GE074791.1|GE074791
EST:     GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG                         AAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA