Sequence
atgc intronic sequence ATGC exonic sequenceGTGAGCAAGGAATGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAGgtccatatgttttatttattattatggatttctcaacgaagttactacaattttgtattattgtattgtttgcatactattttaaatttcaaatggtggaatccacgtgtaactggtgtaatagctctaacaatctgatttttctatctcag
Basic information
species | Glycine max |
transcript | GLYMA18G47910.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G069916_T04 (Zea mays), 5'ss of exon 7
GTGAGCAAGGAATGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAGgt--cca--tatgttttatttattattatggatttc--tcaacgaagttactacaattttgtattattgtattgtttgc---atactattttaaat-----ttca----aatggtggaatccacgtgtaactggtgtaat-agctctaacaatctgatttttctatctcag----------
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GTGAACAAGGCATGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAGgtagtcaattagccataatttcgtattttgatgttcattttaccagtttaggtagtttttttacttctttttaccttgctgtgagctgtctcagacaagggtttatgacattggcagtattctttt-tatcttgtttaatgaaccttgactgatggataatttggttttgactattattag
upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G17440.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGAGCAAGGAATGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAGgtccatatgttttatttattattatggatttctcaacgaagttactacaattttgtattattgtattgtttgcatactattttaaatttcaaatggtggaatccacgtgtaactggtgtaatagctctaacaatctgatttttctatctcag
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GTGAACAAGGGATGGTTGATGAAGCGCAGAAAGCACTAGAAGAGGCGGAAGCTCTTAAGAAGgtt----tgttttctttcgtaaattagttttct-------gtttcg-----ttcttgtttccaagttactt-catactttataagatttgga--gatgttaatgaagtcta-ttgacaca--------------------------------
upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G03340.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGAGCAAGGAATGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAGgtccatatgttttatttattattatggatttctcaacgaagttactacaattttgtattattgtattgtttgcatactattttaaatttcaaatggtggaatccacgtgtaactggtgtaatagctctaacaatctgatttttctatctcag
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GTGAACAAGGAATGGTTGATGAAGCCCAGAAAGCCCTGGAAGAGGCTGAAGCTCTTAAGAAGgtgtgttctctttcttatttctttttcttttccccctacttttatt--agtcactaataattgttgggcctaaat-ttgtttcag-------------------------------------------------------------------
upper sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g00800.t01 (Vitis vinifera), 5'ss of exon 7
GTGAGCAAGGAATGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAGgtccatatgttttatttattattatggatttctcaacgaagttactacaattttgtattattgtattgtttgcatactattttaaatttcaaatggtggaatccacgtgtaactggtgtaatagctctaacaatctgatttttctatctcag
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GCGAGCAAGGAATGATAGACGAGGCACAGAAAGCATTGGAAGAGGCTGAAGCACTTAAGAAGgtttgtgt-ttttctttaggttcat---cttgtttgt----ttgtagca--tttgt-ccatattcttatttg--tattatatgaggttttgatatctgttatttatatattaa---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10847913|gb|BF071644.1|BF071644EST: TGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAG CTTCCTGCCAGGCAAGAGCCAGTGTTGGATTCTTCANAGTATACGGCGGCA
genomic: TGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAGgtccatatgt ... tctatctcagCTTCCTGCCAGGCAAGAGCCAGTGTTGGATTCTTCAAAGTATACGGCGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAGCAAGGAATGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAGgtccatatgttttatttattattatggatttctcaacgaagttactacaattttgtattattgtattgtttgcatactattttaaatttcaaatggtggaatccacgtgtaactggtgtaatagctctaacaatctgatttttctatctcag
- - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG