1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacctttttcttccgttttctcactcctcgttcttcgtttagggcttcattatttttttgattccctttctctctgtctccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA
species | Glycine max |
transcript | GLYMA18G47910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG AAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAEST: gi|193555503|gb|FK515948.1|FK515948
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG GAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAEST: gi|209725035|gb|BW659770.1|BW659770
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG AAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAEST: gi|193492617|gb|FK455741.1|FK455741
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG AAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAEST: gi|193649862|gb|FK595459.1|FK595459
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG GAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAEST: gi|208276609|gb|GE074791.1|GE074791
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
EST: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACG AAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
genomic: GTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgtaacctttt ... tccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAA
ttcgtttagggcttcattatttttttgattccctttctctctgtctccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA
ttttgat putative branch site (score: 4)
cttcattatttttttg CT-rich tract
ttcattatttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctttttcttccgttttctcactcctcgttcttcgtttagggcttcattatttttttgattccctttctctctgtctccgtttcagAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC