1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtatattctagggcctcctgattaataactcaactgttaaattgacttgcactgtaggtttgacttctttcgtttccttgcagCCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGAAGTGTAGGAAGATTTTGTTCTAAATTGGGATGACACAGTTGAGAAGAAT
species | Glycine max |
transcript | GLYMA18G47880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTTGCGGAAGATGCCAAGTCTGTAAGCGTTGACACT CCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGAEST: gi|209722483|gb|BW668758.1|BW668758
genomic: CGTTGCGGAAGATGCCAAGTCTGTAAGCGTTGACACTgtgagtatat ... ttccttgcagCCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGA
EST: CTATAGTTGAAATCGTTGCGGAAGATGCCAAGTCTGTAAGCGTTGACACT CCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGAEST: gi|208139787|gb|GD933443.1|GD933443
genomic: CTATAGTTGAAATCGTTGCGGAAGATGCCAAGTCTGTAAGCGTTGACACTgtgagtatat ... ttccttgcagCCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGA
EST: TAGTTGAAATCGTTGCGGAAGATGCCAAGTCTGTAAGCGTTGACACT CCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGA
genomic: TAGTTGAAATCGTTGCGGAAGATGCCAAGTCTGTAAGCGTTGACACTgtgagtatat ... ttccttgcagCCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGA
ctcaactgttaaattgacttgcactgtaggtttgacttctttcgtttccttgcagCCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGAAGTGTAGGAAGATTTTGTTCTAAATTGGGATGACACAGTTGAGAAGAAT
tttgacttctttcgtt CT-rich tract
tgttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatattctagggcctcctgattaataactcaactgttaaattgacttgcactgtaggtttgacttctttcgtttccttgcagCCCCTATTTGTGATTCAACCATAGAGCTCAGAGTATTTGAATAGTAGAGGAAGTGTAGGAAGATTTTGTTCTAAATTGGGATGACACAGTTGAGAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA