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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACCACCCGCAAAGCCTTTAGCAGAACCATCTTCTTCAGTGTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagatgcttaagtcttgtttccttctattagtaatagcaaatgtataagctttttgctgcatgattggagtggagcaatcagctatgaaaaacttcatgtccaattttctcctgcag

Basic information

species Glycine max
transcript GLYMA18G47880.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 3
AGGAACCACCCGCAAAGCCTTTAGCAGAACCATCTTCTTCAGTGTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagatgcttaagtcttgtttccttctattagtaatagcaaatgtataagctttttgctg-catgattggagtggagcaatcagctatgaaaaacttcatgtccaattttctcctgcag
| | |      |  ||| | | |    |||| ||  || | |  |||||  || | |||||  ||||| |||| ||||||||||||||||||||||| |||||||||   ||| || |  |   |||||          ||||  || |   || | ||  |   |||| |  |||   | |       | ||     |                        
AAGCAAAGGATGTTAAGTCATCAAACAAACCTTCGCCTGCGGCTTTGGCTTCTGAGGAATCAATCTCTGAGTTCATTACTCAAGTTGCAAGTCTTGTGAAgtaagcaa--gctcaatttgttactcctt---------gtagcctatttgacagttattcccaaacatggtcagagcaaatcgtgtttttctgttttgcag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165851|gb|HO008822.1|HO008822
EST:     ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAA                         GCTTGTTGATTCAAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGACGT
genomic: ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagat ... tctcctgcagGCTTGTTGATTCAAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGACGT