Sequence
atgc intronic sequence ATGC exonic sequencegtacattttatctattatatagttttacatttttgtgtcatgcttttttgaaacctaatgcgaagtattcttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATTGAA
Basic information
| species | Glycine max |
| transcript | GLYMA18G47880.1 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G47880.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g00760.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------------gtacattttatctattatatagttttacatttttgtgtcatgcttttttgaaaccta-atgcgaagtattcttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATTGAA
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gtgattcttctctagctagtgatttagttcaatcttaataatcatttcaggatgattggtata-ggccatttaatccagcagtacttttttattcagcttacatgaggacctttctcattttagGTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209722483|gb|BW668758.1|BW668758EST: CAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAG GTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATG
genomic: CAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAGgtacatttta ... cttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacatttttgtgtcatgcttttttgaaacctaatgcgaagtattcttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATTGAA
acctaat putative branch site (score: 3)
tattcttccttt putative PPT
ttttttgaaa TA-rich tract
